Hb_007059_010

Information

Type -
Description -
Location Contig7059: 18511-22681
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09690g
description hypothetical protein
nr
ID XP_012082627.1
description PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
swissprot
ID O59729
description Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3E7.09 PE=3 SV=1
trembl
ID A0A067JYL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19528 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55112: 18548-22699
cDNA
(Sanger)
(ID:Location)		 028_C08.ab1: 18548-20295 , 033_H09.ab1: 18555-20293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007059_010 0.0 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
2 Hb_006827_020 0.0546789217 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007317_110 0.0557072237 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
4 Hb_002783_240 0.0601119002 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
5 Hb_000538_100 0.0632180976 - - conserved hypothetical protein [Ricinus communis]
6 Hb_103012_010 0.065843335 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
7 Hb_009775_020 0.0664077356 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
8 Hb_158062_010 0.0681717673 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
9 Hb_000085_160 0.0684965404 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
10 Hb_023344_030 0.0689847044 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
11 Hb_010712_030 0.0709220776 - - conserved hypothetical protein [Ricinus communis]
12 Hb_040262_010 0.0712138089 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
13 Hb_005170_040 0.0722183172 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
14 Hb_002716_130 0.0730257285 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
15 Hb_000152_380 0.0730363984 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
16 Hb_000451_010 0.0751636387 - - secretory carrier membrane protein, putative [Ricinus communis]
17 Hb_000010_330 0.0752843997 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
18 Hb_000120_670 0.0759259524 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
19 Hb_143629_210 0.076294511 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
20 Hb_000205_300 0.0763840569 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]

Gene co-expression network

sample Hb_007059_010 Hb_007059_010 Hb_006827_020 Hb_006827_020 Hb_007059_010--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_007059_010--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_000538_100 Hb_000538_100 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020 Hb_006827_020--Hb_007317_110 Hb_000808_270 Hb_000808_270 Hb_006827_020--Hb_000808_270 Hb_006827_020--Hb_000538_100 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_002783_240--Hb_103012_010 Hb_005211_100 Hb_005211_100 Hb_002783_240--Hb_005211_100 Hb_040262_010 Hb_040262_010 Hb_002783_240--Hb_040262_010 Hb_001946_010 Hb_001946_010 Hb_002783_240--Hb_001946_010 Hb_000345_240 Hb_000345_240 Hb_002783_240--Hb_000345_240 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_004310_150 Hb_004310_150 Hb_009775_020--Hb_004310_150 Hb_009775_020--Hb_040262_010 Hb_005618_160 Hb_005618_160 Hb_009775_020--Hb_005618_160 Hb_010712_030 Hb_010712_030 Hb_009775_020--Hb_010712_030 Hb_000960_060 Hb_000960_060 Hb_009775_020--Hb_000960_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76025 4.70512 4.17284 7.30917 10.4547 9.82522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.81391 6.44109 6.63526 5.62577 3.07734

CAGE analysis