Hb_006332_010

Information

Type -
Description -
Location Contig6332: 47930-53062
Sequence    

Annotation

kegg
ID vvi:104878487
description probable LRR receptor-like serine/threonine-protein kinase At5g10290
nr
ID XP_010647293.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
swissprot
ID C0LGS3
description Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1
trembl
ID D7TGC7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0701g00010 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at5g10290 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51866: 47919-69070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006332_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
2 Hb_004447_060 0.0698825747 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
3 Hb_007163_090 0.0743866248 - - PREDICTED: protein spt2-like [Jatropha curcas]
4 Hb_148644_010 0.0761445912 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_002811_360 0.0780279755 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
6 Hb_004767_100 0.0785645581 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_001301_200 0.0788201485 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
8 Hb_023344_030 0.078856465 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_003195_060 0.0788762576 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
10 Hb_185830_020 0.0794307006 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000245_130 0.0827253141 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
12 Hb_033642_010 0.0841725173 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
13 Hb_000207_390 0.0852788233 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
14 Hb_002982_040 0.0862286236 - - mta/sah nucleosidase, putative [Ricinus communis]
15 Hb_022250_130 0.0868481621 - - inositol hexaphosphate kinase, putative [Ricinus communis]
16 Hb_005883_050 0.0878305243 - - PREDICTED: transportin-3 [Jatropha curcas]
17 Hb_002154_030 0.0884173598 - - RNA binding protein, putative [Ricinus communis]
18 Hb_000103_180 0.0884299776 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_003766_040 0.0885783102 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001789_090 0.0893644182 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]

Gene co-expression network

sample Hb_006332_010 Hb_006332_010 Hb_004447_060 Hb_004447_060 Hb_006332_010--Hb_004447_060 Hb_007163_090 Hb_007163_090 Hb_006332_010--Hb_007163_090 Hb_148644_010 Hb_148644_010 Hb_006332_010--Hb_148644_010 Hb_002811_360 Hb_002811_360 Hb_006332_010--Hb_002811_360 Hb_004767_100 Hb_004767_100 Hb_006332_010--Hb_004767_100 Hb_001301_200 Hb_001301_200 Hb_006332_010--Hb_001301_200 Hb_004447_060--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_004447_060--Hb_001797_050 Hb_004619_050 Hb_004619_050 Hb_004447_060--Hb_004619_050 Hb_048937_040 Hb_048937_040 Hb_004447_060--Hb_048937_040 Hb_004447_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004447_060--Hb_000820_170 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_007163_090--Hb_001797_050 Hb_002835_080 Hb_002835_080 Hb_148644_010--Hb_002835_080 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_004032_150 Hb_004032_150 Hb_148644_010--Hb_004032_150 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_028872_140 Hb_028872_140 Hb_002811_360--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_002811_360--Hb_001454_210 Hb_000062_240 Hb_000062_240 Hb_002811_360--Hb_000062_240 Hb_002811_360--Hb_001301_200 Hb_004767_100--Hb_004032_150 Hb_000608_240 Hb_000608_240 Hb_004767_100--Hb_000608_240 Hb_000318_290 Hb_000318_290 Hb_004767_100--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_004767_100--Hb_005170_040 Hb_004767_100--Hb_148644_010 Hb_000205_300 Hb_000205_300 Hb_004767_100--Hb_000205_300 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_001301_200--Hb_004724_200 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_001301_200--Hb_048937_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5852 10.3349 4.58785 11.5718 15.6769 33.4315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2014 15.9677 18.2203 11.5672 5.96765

CAGE analysis