Hb_002811_360

Information

Type -
Description -
Location Contig2811: 285401-290924
Sequence    

Annotation

kegg
ID egr:104415433
description GDP-mannose 3,5-epimerase 2
nr
ID XP_010025020.1
description PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
swissprot
ID A2Z7B3
description GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1
trembl
ID A0A059B6E3
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04339 PE=4 SV=1
Gene Ontology
ID GO:0003824
description gdp-mannose -epimerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29443: 285403-288781 , PASA_asmbl_29444: 286191-291058
cDNA
(Sanger)
(ID:Location)		 044_B16.ab1: 286843-291055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_360 0.0 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
2 Hb_004724_200 0.0556907907 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
3 Hb_039837_010 0.0560242881 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
4 Hb_028872_140 0.0587924846 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
5 Hb_001454_210 0.0607370026 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
6 Hb_000062_240 0.0616004738 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
7 Hb_001301_200 0.0647381211 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
8 Hb_000120_950 0.0690757875 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_015306_020 0.0697019604 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
10 Hb_000802_080 0.06975525 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
11 Hb_007441_120 0.0698427635 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
12 Hb_048937_040 0.0719710877 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
13 Hb_003195_070 0.0725397197 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_004109_090 0.072590038 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000103_180 0.0734894376 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
16 Hb_001789_090 0.0735433391 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
17 Hb_033642_010 0.0738622203 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
18 Hb_000398_180 0.0747629503 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
19 Hb_023344_030 0.075188695 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
20 Hb_002609_110 0.0758180325 - - hypothetical protein JCGZ_08497 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_360 Hb_002811_360 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_028872_140 Hb_028872_140 Hb_002811_360--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_002811_360--Hb_001454_210 Hb_000062_240 Hb_000062_240 Hb_002811_360--Hb_000062_240 Hb_001301_200 Hb_001301_200 Hb_002811_360--Hb_001301_200 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_004724_200--Hb_001301_200 Hb_048937_040 Hb_048937_040 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_003058_130 Hb_003058_130 Hb_039837_010--Hb_003058_130 Hb_009111_050 Hb_009111_050 Hb_039837_010--Hb_009111_050 Hb_039837_010--Hb_001454_210 Hb_039837_010--Hb_028872_140 Hb_000321_070 Hb_000321_070 Hb_039837_010--Hb_000321_070 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_028872_140--Hb_009111_050 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_001454_210--Hb_009111_050 Hb_001030_120 Hb_001030_120 Hb_001454_210--Hb_001030_120 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_000062_240--Hb_015306_020 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_001301_200--Hb_048937_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
221.414 93.3384 62.2759 118.807 199.858 287.258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.342 177.481 232.068 118.074 61.7354

CAGE analysis