Hb_008803_090

Information

Type -
Description -
Location Contig8803: 115924-130037
Sequence    

Annotation

kegg
ID rcu:RCOM_0364210
description signalosome subunit, putative
nr
ID XP_012081866.1
description PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
swissprot
ID Q8W206
description COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2
trembl
ID A0A067K375
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19231 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61421: 115993-130018 , PASA_asmbl_61423: 117697-118206
cDNA
(Sanger)
(ID:Location)		 015_B24.ab1: 129692-130010 , 024_O13.ab1: 129338-130014 , 032_B14.ab1: 128576-130015 , 033_L03.ab1: 121977-130015

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008803_090 0.0 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
2 Hb_106552_050 0.0608559969 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
3 Hb_001926_030 0.0609299002 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
4 Hb_001635_170 0.0624635572 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
5 Hb_001595_030 0.063447472 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
6 Hb_005532_050 0.0683524585 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_001677_210 0.0694210965 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
8 Hb_003464_050 0.0695587959 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
9 Hb_033153_050 0.0731996123 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
10 Hb_029920_050 0.0733752119 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
11 Hb_001252_010 0.074025912 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
12 Hb_011942_080 0.0747581661 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
13 Hb_000327_120 0.0748314986 - - FGFR1 oncogene partner, putative [Ricinus communis]
14 Hb_000879_200 0.076519849 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
15 Hb_000179_030 0.0768090081 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
16 Hb_000498_010 0.0774766459 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000853_230 0.0791271346 - - syntaxin, putative [Ricinus communis]
18 Hb_000976_320 0.0798806739 - - UPF0061 protein azo1574 [Morus notabilis]
19 Hb_004055_150 0.0816208439 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007336_020 0.0816663396 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008803_090 Hb_008803_090 Hb_106552_050 Hb_106552_050 Hb_008803_090--Hb_106552_050 Hb_001926_030 Hb_001926_030 Hb_008803_090--Hb_001926_030 Hb_001635_170 Hb_001635_170 Hb_008803_090--Hb_001635_170 Hb_001595_030 Hb_001595_030 Hb_008803_090--Hb_001595_030 Hb_005532_050 Hb_005532_050 Hb_008803_090--Hb_005532_050 Hb_001677_210 Hb_001677_210 Hb_008803_090--Hb_001677_210 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_001926_030--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_001926_030--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_001926_030--Hb_002686_250 Hb_006620_020 Hb_006620_020 Hb_001926_030--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_001595_030--Hb_000327_120 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_003464_050 Hb_003464_050 Hb_005532_050--Hb_003464_050 Hb_001680_010 Hb_001680_010 Hb_005532_050--Hb_001680_010 Hb_001301_200 Hb_001301_200 Hb_005532_050--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_005532_050--Hb_001797_050 Hb_001541_020 Hb_001541_020 Hb_005532_050--Hb_001541_020 Hb_000808_270 Hb_000808_270 Hb_001677_210--Hb_000808_270 Hb_003766_040 Hb_003766_040 Hb_001677_210--Hb_003766_040 Hb_000629_010 Hb_000629_010 Hb_001677_210--Hb_000629_010 Hb_001677_210--Hb_006185_050 Hb_000926_280 Hb_000926_280 Hb_001677_210--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.8316 30.6945 28.5615 19.7696 39.8667 47.9204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.5544 31.0771 32.8336 19.5849 13.1799

CAGE analysis