Hb_022408_010

Information

Type -
Description -
Location Contig22408: 10428-14051
Sequence    

Annotation

kegg
ID rcu:RCOM_1176800
description hypothetical protein
nr
ID XP_012088379.1
description PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
swissprot
ID A5YVF1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1
trembl
ID A0A067JW68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25872 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23313: 9109-14026 , PASA_asmbl_23314: 9345-9800
cDNA
(Sanger)
(ID:Location)		 016_J06.ab1: 9109-11421

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022408_010 0.0 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
2 Hb_001541_020 0.045530538 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
3 Hb_000244_250 0.0603400501 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
4 Hb_002255_050 0.0649294269 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_002221_050 0.0669137941 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
6 Hb_000424_010 0.0679605736 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
7 Hb_000107_500 0.0680700557 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
8 Hb_004055_040 0.0696632373 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_005730_030 0.0711508818 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_003362_040 0.0712216703 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
11 Hb_175338_020 0.0718153739 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
12 Hb_004204_080 0.0729554727 - - diacylglycerol kinase, theta, putative [Ricinus communis]
13 Hb_000529_260 0.0739256628 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
14 Hb_006649_060 0.0751933915 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000032_320 0.075840052 - - protein binding protein, putative [Ricinus communis]
16 Hb_001797_050 0.0763306214 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
17 Hb_002301_220 0.0788433329 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
18 Hb_000283_070 0.0788862723 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
19 Hb_007885_070 0.0804801225 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
20 Hb_001366_040 0.0808727066 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_022408_010 Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_022408_010--Hb_001541_020 Hb_000244_250 Hb_000244_250 Hb_022408_010--Hb_000244_250 Hb_002255_050 Hb_002255_050 Hb_022408_010--Hb_002255_050 Hb_002221_050 Hb_002221_050 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_000107_500 Hb_000107_500 Hb_022408_010--Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_001541_020--Hb_002221_050 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_000283_070 Hb_000283_070 Hb_002255_050--Hb_000283_070 Hb_006831_110 Hb_006831_110 Hb_002255_050--Hb_006831_110 Hb_002255_050--Hb_002221_050 Hb_009627_010 Hb_009627_010 Hb_002255_050--Hb_009627_010 Hb_000645_120 Hb_000645_120 Hb_002255_050--Hb_000645_120 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_000424_010--Hb_000529_260 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020 Hb_000107_500--Hb_000283_070 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.439 109.032 48.9714 46.3096 181.252 169.212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.1523 46.6142 122.211 69.5232 50.5208

CAGE analysis