Hb_000645_120

Information

Type -
Description -
Location Contig645: 96771-102378
Sequence    

Annotation

kegg
ID rcu:RCOM_1000310
description non-canonical ubiquitin conjugating enzyme, putative (EC:6.3.2.19)
nr
ID XP_012084095.1
description PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
swissprot
ID Q9LSP7
description Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1
trembl
ID B9RZP3
description Non-canonical ubiquitin conjugating enzyme, putative OS=Ricinus communis GN=RCOM_1000310 PE=4 SV=1
Gene Ontology
ID GO:0044444
description ubiquitin-conjugating enzyme e2 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52260: 96854-102663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_120 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
2 Hb_000283_070 0.0577767075 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
3 Hb_001140_350 0.0614423666 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
4 Hb_008864_110 0.0615695585 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_005321_020 0.0645011564 - - splicing factor-related family protein [Populus trichocarpa]
6 Hb_000510_310 0.0664661944 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
7 Hb_003124_130 0.0674211306 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
8 Hb_010193_050 0.0676898004 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006831_110 0.0700825809 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
10 Hb_002255_050 0.0711775601 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
11 Hb_002304_090 0.0725999517 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
12 Hb_033187_050 0.0727991067 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
13 Hb_000836_270 0.0751611879 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
14 Hb_000107_500 0.0765050377 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
15 Hb_000755_030 0.0773547532 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
16 Hb_001454_320 0.0775116969 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
17 Hb_001454_280 0.0775632335 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
18 Hb_000567_010 0.0776295282 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
19 Hb_007188_070 0.0798526333 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
20 Hb_000173_510 0.0812084219 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]

Gene co-expression network

sample Hb_000645_120 Hb_000645_120 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_080313_010 Hb_080313_010 Hb_001140_350--Hb_080313_010 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_008864_110--Hb_002400_470 Hb_000123_090 Hb_000123_090 Hb_008864_110--Hb_000123_090 Hb_001047_030 Hb_001047_030 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_005321_020--Hb_006831_110 Hb_000563_640 Hb_000563_640 Hb_005321_020--Hb_000563_640 Hb_003531_060 Hb_003531_060 Hb_005321_020--Hb_003531_060 Hb_005321_020--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_005321_020--Hb_009620_050 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000510_310--Hb_000107_500 Hb_003124_130--Hb_000567_010 Hb_000796_190 Hb_000796_190 Hb_003124_130--Hb_000796_190 Hb_147737_010 Hb_147737_010 Hb_003124_130--Hb_147737_010 Hb_001454_320 Hb_001454_320 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_000160_290 Hb_000160_290 Hb_003124_130--Hb_000160_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.316 72.4732 41.9906 60.186 95.5231 118.979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.1128 35.7207 60.5192 54.6184 27.3791

CAGE analysis