Hb_001575_080

Information

Type -
Description -
Location Contig1575: 142936-166584
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09690g
description POPTRDRAFT_835900; Villin 4 family protein
nr
ID XP_012075141.1
description PREDICTED: villin-4-like [Jatropha curcas]
swissprot
ID O65570
description Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1
trembl
ID A0A067KGP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10390 PE=4 SV=1
Gene Ontology
ID GO:0051015
description villin 4 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13757: 143113-165956 , PASA_asmbl_13758: 143113-165899 , PASA_asmbl_13759: 157948-158242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001575_080 0.0 - - PREDICTED: villin-4-like [Jatropha curcas]
2 Hb_003018_160 0.0595560511 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
3 Hb_011497_010 0.0718493055 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
4 Hb_000116_280 0.0897807711 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
5 Hb_175338_020 0.0901735825 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
6 Hb_003847_120 0.0918045153 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000906_060 0.0936285314 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
8 Hb_010222_080 0.093937709 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
9 Hb_006816_300 0.0950967902 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
10 Hb_020665_030 0.0968046775 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002601_120 0.0974112196 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
12 Hb_000046_450 0.097713143 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
13 Hb_002493_090 0.0981640274 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
14 Hb_000173_510 0.0992831983 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
15 Hb_008643_060 0.0993995122 - - unnamed protein product [Coffea canephora]
16 Hb_001975_020 0.0995990074 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
17 Hb_000107_530 0.1005931362 - - calcium-dependent protein kinase, putative [Ricinus communis]
18 Hb_002133_030 0.1016437055 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
19 Hb_004724_360 0.1019107995 - - OTU-like cysteine protease family protein [Populus trichocarpa]
20 Hb_001504_160 0.1020148307 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]

Gene co-expression network

sample Hb_001575_080 Hb_001575_080 Hb_003018_160 Hb_003018_160 Hb_001575_080--Hb_003018_160 Hb_011497_010 Hb_011497_010 Hb_001575_080--Hb_011497_010 Hb_000116_280 Hb_000116_280 Hb_001575_080--Hb_000116_280 Hb_175338_020 Hb_175338_020 Hb_001575_080--Hb_175338_020 Hb_003847_120 Hb_003847_120 Hb_001575_080--Hb_003847_120 Hb_000906_060 Hb_000906_060 Hb_001575_080--Hb_000906_060 Hb_003018_160--Hb_011497_010 Hb_006816_300 Hb_006816_300 Hb_003018_160--Hb_006816_300 Hb_003018_160--Hb_000116_280 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090 Hb_001975_020 Hb_001975_020 Hb_003018_160--Hb_001975_020 Hb_003716_020 Hb_003716_020 Hb_011497_010--Hb_003716_020 Hb_002159_040 Hb_002159_040 Hb_011497_010--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_011497_010--Hb_000244_240 Hb_011497_010--Hb_000116_280 Hb_005399_020 Hb_005399_020 Hb_000116_280--Hb_005399_020 Hb_000367_290 Hb_000367_290 Hb_000116_280--Hb_000367_290 Hb_000116_280--Hb_001975_020 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000227_380 Hb_000227_380 Hb_175338_020--Hb_000227_380 Hb_000424_010 Hb_000424_010 Hb_175338_020--Hb_000424_010 Hb_002652_040 Hb_002652_040 Hb_175338_020--Hb_002652_040 Hb_000529_260 Hb_000529_260 Hb_175338_020--Hb_000529_260 Hb_007849_020 Hb_007849_020 Hb_175338_020--Hb_007849_020 Hb_015026_050 Hb_015026_050 Hb_003847_120--Hb_015026_050 Hb_020665_030 Hb_020665_030 Hb_003847_120--Hb_020665_030 Hb_001473_090 Hb_001473_090 Hb_003847_120--Hb_001473_090 Hb_006915_060 Hb_006915_060 Hb_003847_120--Hb_006915_060 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320 Hb_004724_360 Hb_004724_360 Hb_000906_060--Hb_004724_360 Hb_001504_160 Hb_001504_160 Hb_000906_060--Hb_001504_160 Hb_012016_020 Hb_012016_020 Hb_000906_060--Hb_012016_020 Hb_012654_010 Hb_012654_010 Hb_000906_060--Hb_012654_010 Hb_002341_030 Hb_002341_030 Hb_000906_060--Hb_002341_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.5848 29.0399 10.6959 18.6992 59.9194 68.842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.086 16.9433 26.3786 13.7853 12.0539

CAGE analysis