Hb_000521_260

Information

Type -
Description -
Location Contig521: 200038-203340
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23620g
description hypothetical protein
nr
ID XP_012092615.1
description PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q0JCU7
description Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=ZEP PE=2 SV=1
trembl
ID A0A067J9G5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05275 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zeaxanthin chloroplastic-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46723: 200058-202110 , PASA_asmbl_46724: 202395-203100 , PASA_asmbl_46725: 203142-203549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_260 0.0 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
2 Hb_075481_030 0.0655611069 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
3 Hb_000768_110 0.0743767488 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
4 Hb_006586_050 0.0748473821 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
5 Hb_000510_310 0.0795469716 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
6 Hb_008511_030 0.0811543498 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
7 Hb_000976_320 0.0818255527 - - UPF0061 protein azo1574 [Morus notabilis]
8 Hb_017491_030 0.0819398354 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
9 Hb_000173_510 0.0824241835 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
10 Hb_001347_040 0.0828442875 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
11 Hb_000861_070 0.0834914054 - - conserved hypothetical protein [Ricinus communis]
12 Hb_142439_010 0.083782132 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
13 Hb_001377_070 0.0847874091 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004724_320 0.0849129318 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_008864_110 0.0861720657 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
16 Hb_004162_280 0.0867271494 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
17 Hb_008159_020 0.0868450504 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_000291_190 0.0879821554 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
19 Hb_000352_090 0.0886072796 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
20 Hb_000046_010 0.0888754972 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_260 Hb_000521_260 Hb_075481_030 Hb_075481_030 Hb_000521_260--Hb_075481_030 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_006586_050 Hb_006586_050 Hb_000521_260--Hb_006586_050 Hb_000510_310 Hb_000510_310 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_004162_280 Hb_004162_280 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_004724_320 Hb_004724_320 Hb_075481_030--Hb_004724_320 Hb_000861_070 Hb_000861_070 Hb_075481_030--Hb_000861_070 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000768_110--Hb_000173_510 Hb_000523_040 Hb_000523_040 Hb_006586_050--Hb_000523_040 Hb_006586_050--Hb_000510_310 Hb_000059_210 Hb_000059_210 Hb_006586_050--Hb_000059_210 Hb_000032_320 Hb_000032_320 Hb_006586_050--Hb_000032_320 Hb_164010_060 Hb_164010_060 Hb_006586_050--Hb_164010_060 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000510_310--Hb_000645_120 Hb_031527_020 Hb_031527_020 Hb_008511_030--Hb_031527_020 Hb_005489_080 Hb_005489_080 Hb_008511_030--Hb_005489_080 Hb_000457_050 Hb_000457_050 Hb_008511_030--Hb_000457_050 Hb_000140_080 Hb_000140_080 Hb_008511_030--Hb_000140_080 Hb_033095_020 Hb_033095_020 Hb_008511_030--Hb_033095_020 Hb_000959_270 Hb_000959_270 Hb_008511_030--Hb_000959_270 Hb_106552_050 Hb_106552_050 Hb_000976_320--Hb_106552_050 Hb_011942_080 Hb_011942_080 Hb_000976_320--Hb_011942_080 Hb_008864_110 Hb_008864_110 Hb_000976_320--Hb_008864_110 Hb_000976_320--Hb_000768_110 Hb_000322_100 Hb_000322_100 Hb_000976_320--Hb_000322_100 Hb_001677_210 Hb_001677_210 Hb_000976_320--Hb_001677_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.32429 3.98284 1.75624 2.70484 5.42682 5.79194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59236 3.52909 2.80485 2.74197 0.961189

CAGE analysis