Hb_000032_320

Information

Type -
Description -
Location Contig32: 268271-272131
Sequence    

Annotation

kegg
ID rcu:RCOM_1692040
description protein binding protein, putative
nr
ID XP_002509962.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8N806
description Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2
trembl
ID B9RCS8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1692040 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase ubr7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33720: 268491-268762 , PASA_asmbl_33721: 269921-270032 , PASA_asmbl_33723: 271011-271205 , PASA_asmbl_33724: 271382-272016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_320 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_156850_030 0.0509322811 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
3 Hb_001728_100 0.0604011843 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
4 Hb_002301_220 0.0731075847 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
5 Hb_001541_020 0.074557352 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
6 Hb_022408_010 0.075840052 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
7 Hb_006586_050 0.0770416071 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
8 Hb_000077_070 0.0776455308 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
9 Hb_003020_110 0.0799668526 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
10 Hb_005993_020 0.0821079894 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
11 Hb_000107_500 0.082324495 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
12 Hb_005532_050 0.0826742275 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_003878_140 0.0836613516 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
14 Hb_000224_060 0.0839058854 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
15 Hb_003362_040 0.0843412403 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
16 Hb_002027_260 0.084395963 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
17 Hb_000059_210 0.084953189 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001680_010 0.0855527399 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
19 Hb_003656_160 0.0855808713 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
20 Hb_001616_050 0.087485107 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_320 Hb_000032_320 Hb_156850_030 Hb_156850_030 Hb_000032_320--Hb_156850_030 Hb_001728_100 Hb_001728_100 Hb_000032_320--Hb_001728_100 Hb_002301_220 Hb_002301_220 Hb_000032_320--Hb_002301_220 Hb_001541_020 Hb_001541_020 Hb_000032_320--Hb_001541_020 Hb_022408_010 Hb_022408_010 Hb_000032_320--Hb_022408_010 Hb_006586_050 Hb_006586_050 Hb_000032_320--Hb_006586_050 Hb_156850_030--Hb_001728_100 Hb_000953_010 Hb_000953_010 Hb_156850_030--Hb_000953_010 Hb_000059_210 Hb_000059_210 Hb_156850_030--Hb_000059_210 Hb_004204_080 Hb_004204_080 Hb_156850_030--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_156850_030--Hb_000077_070 Hb_002027_260 Hb_002027_260 Hb_001728_100--Hb_002027_260 Hb_000107_500 Hb_000107_500 Hb_001728_100--Hb_000107_500 Hb_001728_100--Hb_004204_080 Hb_001728_100--Hb_000077_070 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_002301_220--Hb_001541_020 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_002301_220--Hb_022408_010 Hb_001541_020--Hb_022408_010 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_022408_010--Hb_000244_250 Hb_002255_050 Hb_002255_050 Hb_022408_010--Hb_002255_050 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_022408_010--Hb_000107_500 Hb_000523_040 Hb_000523_040 Hb_006586_050--Hb_000523_040 Hb_000510_310 Hb_000510_310 Hb_006586_050--Hb_000510_310 Hb_006586_050--Hb_000059_210 Hb_000521_260 Hb_000521_260 Hb_006586_050--Hb_000521_260 Hb_164010_060 Hb_164010_060 Hb_006586_050--Hb_164010_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5887 16.3308 6.52115 7.23254 20.4344 20.3649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4257 8.62476 15.9813 8.67123 3.90053

CAGE analysis