Hb_001430_120

Information

Type -
Description -
Location Contig1430: 114650-115544
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05980g
description POPTRDRAFT_665537; DNA polymerase delta subunit 4 family protein
nr
ID XP_012070271.1
description PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
swissprot
ID Q3T0X9
description DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1
trembl
ID A0A067L638
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna polymerase delta subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11369: 114706-115633
cDNA
(Sanger)
(ID:Location)		 042_E10.ab1: 114706-115633

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001430_120 0.0 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
2 Hb_142439_010 0.0652766385 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
3 Hb_001358_030 0.080650261 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
4 Hb_000189_340 0.0814812214 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
5 Hb_005260_020 0.0831309879 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
6 Hb_002296_050 0.0857207598 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
7 Hb_004310_150 0.0868513398 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
8 Hb_003929_250 0.0873264048 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
9 Hb_004931_070 0.0874351024 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
10 Hb_001489_150 0.0877290989 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
11 Hb_004032_430 0.0888727425 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
12 Hb_005333_070 0.0906359694 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001486_340 0.0912024235 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
14 Hb_003952_070 0.0930235519 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_105386_010 0.0943635003 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_027295_010 0.0944625479 - - 40S ribosomal protein S7, putative [Ricinus communis]
17 Hb_000092_100 0.094629623 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
18 Hb_000093_160 0.0955839882 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
19 Hb_010068_040 0.0958366227 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
20 Hb_004881_020 0.0960036535 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001430_120 Hb_001430_120 Hb_142439_010 Hb_142439_010 Hb_001430_120--Hb_142439_010 Hb_001358_030 Hb_001358_030 Hb_001430_120--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_001430_120--Hb_000189_340 Hb_005260_020 Hb_005260_020 Hb_001430_120--Hb_005260_020 Hb_002296_050 Hb_002296_050 Hb_001430_120--Hb_002296_050 Hb_004310_150 Hb_004310_150 Hb_001430_120--Hb_004310_150 Hb_005914_060 Hb_005914_060 Hb_142439_010--Hb_005914_060 Hb_003952_070 Hb_003952_070 Hb_142439_010--Hb_003952_070 Hb_142439_010--Hb_000189_340 Hb_000008_330 Hb_000008_330 Hb_142439_010--Hb_000008_330 Hb_075481_030 Hb_075481_030 Hb_142439_010--Hb_075481_030 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_001358_030--Hb_000189_340 Hb_001766_150 Hb_001766_150 Hb_000189_340--Hb_001766_150 Hb_001047_100 Hb_001047_100 Hb_000189_340--Hb_001047_100 Hb_000189_340--Hb_105386_010 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_005333_070 Hb_005333_070 Hb_005260_020--Hb_005333_070 Hb_027295_010 Hb_027295_010 Hb_005260_020--Hb_027295_010 Hb_000205_160 Hb_000205_160 Hb_005260_020--Hb_000205_160 Hb_001489_150 Hb_001489_150 Hb_005260_020--Hb_001489_150 Hb_005260_020--Hb_001358_030 Hb_000107_190 Hb_000107_190 Hb_002296_050--Hb_000107_190 Hb_000220_040 Hb_000220_040 Hb_002296_050--Hb_000220_040 Hb_000610_010 Hb_000610_010 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_000009_530 Hb_000009_530 Hb_002296_050--Hb_000009_530 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.6421 55.8049 47.1264 39.9348 67.9027 104.107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.7374 77.4534 38.7902 41.4743 18.7732

CAGE analysis