Hb_005260_020

Information

Type -
Description -
Location Contig5260: 18422-19990
Sequence    

Annotation

kegg
ID rcu:RCOM_1065090
description hypothetical protein
nr
ID XP_012071848.1
description PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47000: 18382-19844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005260_020 0.0 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
2 Hb_001430_120 0.0831309879 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
3 Hb_005333_070 0.0886050335 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027295_010 0.0975597806 - - 40S ribosomal protein S7, putative [Ricinus communis]
5 Hb_000205_160 0.1041357773 - - Peroxisome biogenesis protein 12 [Morus notabilis]
6 Hb_001489_150 0.1064401428 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
7 Hb_001358_030 0.1073184177 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
8 Hb_012799_130 0.1092075871 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
9 Hb_004931_070 0.1104777999 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
10 Hb_007590_010 0.1122806521 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_003929_250 0.113977762 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
12 Hb_142439_010 0.1140812192 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
13 Hb_002007_180 0.1143794906 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
14 Hb_022250_130 0.1143841619 - - inositol hexaphosphate kinase, putative [Ricinus communis]
15 Hb_000003_160 0.1147163508 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
16 Hb_001369_660 0.1159524946 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
17 Hb_001477_130 0.1169131868 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
18 Hb_022461_010 0.1177442343 - - -
19 Hb_000465_460 0.1181130798 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
20 Hb_005291_030 0.1185695392 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005260_020 Hb_005260_020 Hb_001430_120 Hb_001430_120 Hb_005260_020--Hb_001430_120 Hb_005333_070 Hb_005333_070 Hb_005260_020--Hb_005333_070 Hb_027295_010 Hb_027295_010 Hb_005260_020--Hb_027295_010 Hb_000205_160 Hb_000205_160 Hb_005260_020--Hb_000205_160 Hb_001489_150 Hb_001489_150 Hb_005260_020--Hb_001489_150 Hb_001358_030 Hb_001358_030 Hb_005260_020--Hb_001358_030 Hb_142439_010 Hb_142439_010 Hb_001430_120--Hb_142439_010 Hb_001430_120--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_001430_120--Hb_000189_340 Hb_002296_050 Hb_002296_050 Hb_001430_120--Hb_002296_050 Hb_004310_150 Hb_004310_150 Hb_001430_120--Hb_004310_150 Hb_005333_070--Hb_001358_030 Hb_007590_010 Hb_007590_010 Hb_005333_070--Hb_007590_010 Hb_000245_130 Hb_000245_130 Hb_005333_070--Hb_000245_130 Hb_003929_250 Hb_003929_250 Hb_005333_070--Hb_003929_250 Hb_012008_020 Hb_012008_020 Hb_005333_070--Hb_012008_020 Hb_001226_160 Hb_001226_160 Hb_005333_070--Hb_001226_160 Hb_042083_050 Hb_042083_050 Hb_027295_010--Hb_042083_050 Hb_000003_160 Hb_000003_160 Hb_027295_010--Hb_000003_160 Hb_027295_010--Hb_001358_030 Hb_001369_660 Hb_001369_660 Hb_027295_010--Hb_001369_660 Hb_012389_020 Hb_012389_020 Hb_027295_010--Hb_012389_020 Hb_000099_240 Hb_000099_240 Hb_027295_010--Hb_000099_240 Hb_003126_080 Hb_003126_080 Hb_000205_160--Hb_003126_080 Hb_002284_240 Hb_002284_240 Hb_000205_160--Hb_002284_240 Hb_004223_280 Hb_004223_280 Hb_000205_160--Hb_004223_280 Hb_000720_120 Hb_000720_120 Hb_000205_160--Hb_000720_120 Hb_002081_130 Hb_002081_130 Hb_000205_160--Hb_002081_130 Hb_000926_250 Hb_000926_250 Hb_000205_160--Hb_000926_250 Hb_005291_030 Hb_005291_030 Hb_001489_150--Hb_005291_030 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_004032_150 Hb_004032_150 Hb_001489_150--Hb_004032_150 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270 Hb_007416_280 Hb_007416_280 Hb_001489_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_001489_150--Hb_001638_170 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_001358_030--Hb_000189_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.11736 9.74836 5.36322 5.77415 8.34713 20.4129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7939 16.6591 6.71826 8.52971 2.85585

CAGE analysis