Hb_005333_070

Information

Type -
Description -
Location Contig5333: 58377-62054
Sequence    

Annotation

kegg
ID rcu:RCOM_1039130
description hypothetical protein
nr
ID XP_002514020.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJV1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47467: 58331-61964 , PASA_asmbl_47468: 59129-60071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001358_030 0.0715053464 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
3 Hb_007590_010 0.0732988462 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000245_130 0.0742248341 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
5 Hb_003929_250 0.0811953953 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
6 Hb_012008_020 0.0814388196 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
7 Hb_001226_160 0.0841007322 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
8 Hb_020956_020 0.0844885047 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
9 Hb_001489_150 0.0856187867 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
10 Hb_004767_100 0.0863518015 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
11 Hb_023344_030 0.0867633917 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_003847_080 0.0882523739 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
13 Hb_005260_020 0.0886050335 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
14 Hb_000205_160 0.0890349121 - - Peroxisome biogenesis protein 12 [Morus notabilis]
15 Hb_004128_190 0.0894384309 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
16 Hb_000300_060 0.0896615915 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
17 Hb_009557_070 0.0898961698 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000959_260 0.0904156601 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
19 Hb_000343_160 0.0905114885 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
20 Hb_000510_130 0.0905723138 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005333_070 Hb_005333_070 Hb_001358_030 Hb_001358_030 Hb_005333_070--Hb_001358_030 Hb_007590_010 Hb_007590_010 Hb_005333_070--Hb_007590_010 Hb_000245_130 Hb_000245_130 Hb_005333_070--Hb_000245_130 Hb_003929_250 Hb_003929_250 Hb_005333_070--Hb_003929_250 Hb_012008_020 Hb_012008_020 Hb_005333_070--Hb_012008_020 Hb_001226_160 Hb_001226_160 Hb_005333_070--Hb_001226_160 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_000099_240 Hb_000099_240 Hb_007590_010--Hb_000099_240 Hb_007590_010--Hb_001358_030 Hb_007590_010--Hb_001226_160 Hb_000923_020 Hb_000923_020 Hb_007590_010--Hb_000923_020 Hb_168000_010 Hb_168000_010 Hb_007590_010--Hb_168000_010 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_004128_190 Hb_004128_190 Hb_000245_130--Hb_004128_190 Hb_003847_080 Hb_003847_080 Hb_000245_130--Hb_003847_080 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_002078_150 Hb_002078_150 Hb_000245_130--Hb_002078_150 Hb_000340_300 Hb_000340_300 Hb_003929_250--Hb_000340_300 Hb_000920_180 Hb_000920_180 Hb_003929_250--Hb_000920_180 Hb_009557_070 Hb_009557_070 Hb_003929_250--Hb_009557_070 Hb_000056_200 Hb_000056_200 Hb_003929_250--Hb_000056_200 Hb_003929_250--Hb_096563_010 Hb_000465_460 Hb_000465_460 Hb_003929_250--Hb_000465_460 Hb_003010_030 Hb_003010_030 Hb_012008_020--Hb_003010_030 Hb_012008_020--Hb_009557_070 Hb_000959_260 Hb_000959_260 Hb_012008_020--Hb_000959_260 Hb_012008_020--Hb_002660_080 Hb_002391_300 Hb_002391_300 Hb_012008_020--Hb_002391_300 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_001226_160--Hb_000056_200 Hb_001226_160--Hb_002660_080 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.6872 32.605 14.8931 31.723 44.5413 70.1758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8882 59.8498 35.5823 25.9755 14.1511

CAGE analysis