Hb_005291_030

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig5291: 38714-42367
Sequence    

Annotation

kegg
ID rcu:RCOM_0669570
description brg-1 associated factor, putative
nr
ID XP_002520558.1
description brg-1 associated factor, putative [Ricinus communis]
swissprot
ID O74503
description Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
trembl
ID B9S3I9
description Brg-1 associated factor, putative OS=Ricinus communis GN=RCOM_0669570 PE=4 SV=1
Gene Ontology
ID GO:0005515
description swib complex baf60b domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47265: 38424-42315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005291_030 0.0 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
2 Hb_000030_190 0.0523574004 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
3 Hb_001638_170 0.0598922421 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
4 Hb_001489_150 0.0601321997 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
5 Hb_002271_020 0.0624182698 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
6 Hb_002303_070 0.0639175187 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
7 Hb_002473_130 0.0666261517 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
8 Hb_001221_100 0.0715558941 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
9 Hb_004032_150 0.0723319586 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
10 Hb_017224_030 0.0727310436 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
11 Hb_000086_380 0.0737027017 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
12 Hb_004881_020 0.0739838213 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
13 Hb_011883_010 0.0741258685 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
14 Hb_002685_110 0.0779754406 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
15 Hb_002045_240 0.0786733383 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
16 Hb_007416_280 0.0790847911 - - conserved hypothetical protein [Ricinus communis]
17 Hb_031284_040 0.0797342462 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
18 Hb_010997_080 0.0803118968 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
19 Hb_000173_490 0.0812146464 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
20 Hb_001287_080 0.0819762123 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005291_030 Hb_005291_030 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_000789_310 Hb_000789_310 Hb_000030_190--Hb_000789_310 Hb_000345_380 Hb_000345_380 Hb_000030_190--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000030_190--Hb_001409_020 Hb_007576_110 Hb_007576_110 Hb_000030_190--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_000030_190--Hb_000173_490 Hb_004032_150 Hb_004032_150 Hb_001638_170--Hb_004032_150 Hb_001638_170--Hb_001489_150 Hb_000085_160 Hb_000085_160 Hb_001638_170--Hb_000085_160 Hb_110291_010 Hb_110291_010 Hb_001638_170--Hb_110291_010 Hb_002835_080 Hb_002835_080 Hb_001638_170--Hb_002835_080 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_001489_150--Hb_004032_150 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270 Hb_007416_280 Hb_007416_280 Hb_001489_150--Hb_007416_280 Hb_002271_020--Hb_002473_130 Hb_143398_010 Hb_143398_010 Hb_002271_020--Hb_143398_010 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_005489_060 Hb_005489_060 Hb_002271_020--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_002271_020--Hb_001279_150 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_001599_040 Hb_001599_040 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_002473_130--Hb_003226_140 Hb_002473_130--Hb_143398_010 Hb_002473_130--Hb_001279_150 Hb_002473_130--Hb_005489_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.2458 34.8691 24.6246 34.2021 31.7582 60.7505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.3921 45.7849 29.5012 33.3384 23.2297

CAGE analysis