Hb_005489_060

Information

Type -
Description -
Location Contig5489: 51914-60968
Sequence    

Annotation

kegg
ID rcu:RCOM_1680640
description Anamorsin, putative (EC:5.2.1.8)
nr
ID XP_002509614.1
description Anamorsin, putative [Ricinus communis]
swissprot
ID B9RBT0
description Anamorsin homolog OS=Ricinus communis GN=RCOM_1680640 PE=3 SV=1
trembl
ID A0A067L242
description Anamorsin homolog OS=Jatropha curcas GN=JCGZ_24320 PE=3 SV=1
Gene Ontology
ID GO:0005758
description anamorsin homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48157: 51867-60999 , PASA_asmbl_48158: 51867-60310 , PASA_asmbl_48159: 60556-60941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_060 0.0 - - Anamorsin, putative [Ricinus communis]
2 Hb_001279_150 0.0573528402 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
3 Hb_002473_130 0.0682608471 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
4 Hb_002182_080 0.0733193961 - - 3-5 exonuclease, putative [Ricinus communis]
5 Hb_002271_020 0.0738166194 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
6 Hb_000215_110 0.0749157491 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
7 Hb_000783_010 0.0758516841 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
8 Hb_007101_300 0.0772958839 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
9 Hb_010964_040 0.07821617 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
10 Hb_003750_050 0.0789082543 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
11 Hb_000453_160 0.0796013418 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
12 Hb_003226_140 0.0817760889 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
13 Hb_005054_350 0.0820289872 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
14 Hb_001584_120 0.0820859483 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
15 Hb_000468_060 0.0829378115 - - ku P70 DNA helicase, putative [Ricinus communis]
16 Hb_001599_040 0.0836547788 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
17 Hb_000120_670 0.0839113481 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
18 Hb_000200_020 0.0840810403 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
19 Hb_000120_470 0.0866355377 - - hypothetical protein VITISV_017372 [Vitis vinifera]
20 Hb_002303_070 0.0868162134 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]

Gene co-expression network

sample Hb_005489_060 Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_005489_060--Hb_001279_150 Hb_002473_130 Hb_002473_130 Hb_005489_060--Hb_002473_130 Hb_002182_080 Hb_002182_080 Hb_005489_060--Hb_002182_080 Hb_002271_020 Hb_002271_020 Hb_005489_060--Hb_002271_020 Hb_000215_110 Hb_000215_110 Hb_005489_060--Hb_000215_110 Hb_000783_010 Hb_000783_010 Hb_005489_060--Hb_000783_010 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_001279_150--Hb_000215_110 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_001279_150--Hb_002182_080 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_002473_130--Hb_001279_150 Hb_002835_080 Hb_002835_080 Hb_002182_080--Hb_002835_080 Hb_002182_080--Hb_000215_110 Hb_019280_040 Hb_019280_040 Hb_002182_080--Hb_019280_040 Hb_008092_040 Hb_008092_040 Hb_002182_080--Hb_008092_040 Hb_003108_020 Hb_003108_020 Hb_002182_080--Hb_003108_020 Hb_002271_020--Hb_143398_010 Hb_002271_020--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_002271_020--Hb_001279_150 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_000215_110--Hb_003226_140 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_000510_300 Hb_000510_300 Hb_000783_010--Hb_000510_300 Hb_000200_020 Hb_000200_020 Hb_000783_010--Hb_000200_020 Hb_001366_370 Hb_001366_370 Hb_000783_010--Hb_001366_370 Hb_000720_040 Hb_000720_040 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5694 22.8483 28.9458 41.9986 23.0048 53.3927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.0667 50.776 33.4367 39.0831 20.317

CAGE analysis