Hb_001152_030

Information

Type -
Description -
Location Contig1152: 83034-84500
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22050g
description POPTRDRAFT_1072766; hypothetical protein
nr
ID XP_002301588.1
description hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
swissprot
ID Q9SFC7
description F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1
trembl
ID B9GTQ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s22050g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001152_030 0.0 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
2 Hb_000072_350 0.0924428628 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
3 Hb_001502_060 0.0996356465 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
4 Hb_000529_260 0.1006775211 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
5 Hb_001080_270 0.1024594328 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
6 Hb_001140_250 0.1026501622 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_001221_150 0.1037096936 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
8 Hb_002217_150 0.106340795 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
9 Hb_000030_040 0.1067958358 - - yth domain-containing protein, putative [Ricinus communis]
10 Hb_004718_010 0.1095586687 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
11 Hb_002431_020 0.1122954366 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
12 Hb_001912_100 0.113498462 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
13 Hb_005214_160 0.1168704964 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
14 Hb_000120_610 0.117165827 - - mitotic control protein dis3, putative [Ricinus communis]
15 Hb_000033_030 0.117413454 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
16 Hb_002890_180 0.1176145979 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
17 Hb_003236_010 0.1177590374 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
18 Hb_007101_180 0.1177668831 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
19 Hb_106371_010 0.1183778808 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_000743_040 0.1185318691 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001152_030 Hb_001152_030 Hb_000072_350 Hb_000072_350 Hb_001152_030--Hb_000072_350 Hb_001502_060 Hb_001502_060 Hb_001152_030--Hb_001502_060 Hb_000529_260 Hb_000529_260 Hb_001152_030--Hb_000529_260 Hb_001080_270 Hb_001080_270 Hb_001152_030--Hb_001080_270 Hb_001140_250 Hb_001140_250 Hb_001152_030--Hb_001140_250 Hb_001221_150 Hb_001221_150 Hb_001152_030--Hb_001221_150 Hb_000743_040 Hb_000743_040 Hb_000072_350--Hb_000743_040 Hb_000072_350--Hb_001502_060 Hb_000320_200 Hb_000320_200 Hb_000072_350--Hb_000320_200 Hb_000072_350--Hb_000529_260 Hb_003952_150 Hb_003952_150 Hb_000072_350--Hb_003952_150 Hb_000329_090 Hb_000329_090 Hb_000072_350--Hb_000329_090 Hb_007520_030 Hb_007520_030 Hb_001502_060--Hb_007520_030 Hb_001502_060--Hb_000529_260 Hb_002477_130 Hb_002477_130 Hb_001502_060--Hb_002477_130 Hb_000424_010 Hb_000424_010 Hb_001502_060--Hb_000424_010 Hb_004128_050 Hb_004128_050 Hb_001502_060--Hb_004128_050 Hb_002221_050 Hb_002221_050 Hb_000529_260--Hb_002221_050 Hb_000529_260--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_000529_260--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000529_260--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000529_260--Hb_000510_310 Hb_000529_260--Hb_000320_200 Hb_000227_380 Hb_000227_380 Hb_001080_270--Hb_000227_380 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_002411_120 Hb_002411_120 Hb_001080_270--Hb_002411_120 Hb_000997_030 Hb_000997_030 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_000813_100 Hb_000813_100 Hb_001080_270--Hb_000813_100 Hb_007101_170 Hb_007101_170 Hb_001140_250--Hb_007101_170 Hb_002701_080 Hb_002701_080 Hb_001140_250--Hb_002701_080 Hb_002400_310 Hb_002400_310 Hb_001140_250--Hb_002400_310 Hb_000244_220 Hb_000244_220 Hb_001140_250--Hb_000244_220 Hb_000059_210 Hb_000059_210 Hb_001140_250--Hb_000059_210 Hb_067193_010 Hb_067193_010 Hb_001221_150--Hb_067193_010 Hb_001028_070 Hb_001028_070 Hb_001221_150--Hb_001028_070 Hb_000120_610 Hb_000120_610 Hb_001221_150--Hb_000120_610 Hb_004659_080 Hb_004659_080 Hb_001221_150--Hb_004659_080 Hb_000594_020 Hb_000594_020 Hb_001221_150--Hb_000594_020 Hb_001417_050 Hb_001417_050 Hb_001221_150--Hb_001417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0321 21.1504 2.90486 8.23363 38.5156 23.5667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3712 9.77955 11.1582 19.0431 8.3383

CAGE analysis