Hb_007101_170

Information

Type -
Description -
Location Contig7101: 100001-103816
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10490g
description POPTRDRAFT_805058; DNA polymerase lambda family protein
nr
ID XP_006378412.1
description hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
swissprot
ID Q4R380
description DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1
trembl
ID U5G1H1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s10490g PE=4 SV=1
Gene Ontology
ID GO:0034061
description dna polymerase lambda-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55257: 100074-100943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_170 0.0 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
2 Hb_002400_310 0.0537868932 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
3 Hb_000676_110 0.0757258183 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
4 Hb_001790_020 0.0821530461 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
5 Hb_000030_040 0.0826693672 - - yth domain-containing protein, putative [Ricinus communis]
6 Hb_000206_250 0.08470968 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
7 Hb_010175_020 0.0852435117 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000244_220 0.0858793846 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_000123_210 0.0879382831 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
10 Hb_001140_250 0.0905331431 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
11 Hb_001894_150 0.091093453 - - nucleoredoxin, putative [Ricinus communis]
12 Hb_000152_820 0.0924060165 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
13 Hb_001143_160 0.0924076707 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
14 Hb_106371_010 0.0928512104 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_012634_010 0.0932059046 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
16 Hb_000487_290 0.0944438806 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
17 Hb_000207_390 0.0945098004 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
18 Hb_000160_040 0.0955093559 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
19 Hb_000291_110 0.0958997962 - - eukaryotic translation initiation factor [Hevea brasiliensis]
20 Hb_093084_060 0.1003358776 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_170 Hb_007101_170 Hb_002400_310 Hb_002400_310 Hb_007101_170--Hb_002400_310 Hb_000676_110 Hb_000676_110 Hb_007101_170--Hb_000676_110 Hb_001790_020 Hb_001790_020 Hb_007101_170--Hb_001790_020 Hb_000030_040 Hb_000030_040 Hb_007101_170--Hb_000030_040 Hb_000206_250 Hb_000206_250 Hb_007101_170--Hb_000206_250 Hb_010175_020 Hb_010175_020 Hb_007101_170--Hb_010175_020 Hb_093084_060 Hb_093084_060 Hb_002400_310--Hb_093084_060 Hb_000244_220 Hb_000244_220 Hb_002400_310--Hb_000244_220 Hb_000318_510 Hb_000318_510 Hb_002400_310--Hb_000318_510 Hb_006586_050 Hb_006586_050 Hb_002400_310--Hb_006586_050 Hb_001143_160 Hb_001143_160 Hb_002400_310--Hb_001143_160 Hb_001369_420 Hb_001369_420 Hb_000676_110--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000676_110--Hb_000358_150 Hb_001252_080 Hb_001252_080 Hb_000676_110--Hb_001252_080 Hb_008695_180 Hb_008695_180 Hb_000676_110--Hb_008695_180 Hb_000676_110--Hb_001143_160 Hb_001493_030 Hb_001493_030 Hb_000676_110--Hb_001493_030 Hb_012634_010 Hb_012634_010 Hb_001790_020--Hb_012634_010 Hb_001571_040 Hb_001571_040 Hb_001790_020--Hb_001571_040 Hb_106371_010 Hb_106371_010 Hb_001790_020--Hb_106371_010 Hb_000321_070 Hb_000321_070 Hb_001790_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_001790_020--Hb_000160_040 Hb_000123_210 Hb_000123_210 Hb_001790_020--Hb_000123_210 Hb_001912_100 Hb_001912_100 Hb_000030_040--Hb_001912_100 Hb_002477_030 Hb_002477_030 Hb_000030_040--Hb_002477_030 Hb_000487_290 Hb_000487_290 Hb_000030_040--Hb_000487_290 Hb_075481_030 Hb_075481_030 Hb_000030_040--Hb_075481_030 Hb_000030_040--Hb_001790_020 Hb_000030_040--Hb_106371_010 Hb_000206_250--Hb_000123_210 Hb_090804_010 Hb_090804_010 Hb_000206_250--Hb_090804_010 Hb_004994_220 Hb_004994_220 Hb_000206_250--Hb_004994_220 Hb_000206_250--Hb_001143_160 Hb_002131_020 Hb_002131_020 Hb_000206_250--Hb_002131_020 Hb_000152_820 Hb_000152_820 Hb_010175_020--Hb_000152_820 Hb_007757_110 Hb_007757_110 Hb_010175_020--Hb_007757_110 Hb_175338_030 Hb_175338_030 Hb_010175_020--Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_010175_020--Hb_002307_100 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7585 9.56098 2.68467 4.97433 16.3217 11.6632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.34374 7.37013 12.0918 11.6589 3.3979

CAGE analysis