Hb_000206_250

Information

Type -
Description -
Location Contig206: 314186-319451
Sequence    

Annotation

kegg
ID cit:102608982
description RNA-binding protein Musashi homolog 2-like
nr
ID XP_012087749.1
description PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
swissprot
ID Q9LKA4
description UBP1-associated protein 2C OS=Arabidopsis thaliana GN=UBA2C PE=2 SV=1
trembl
ID A0A067JYJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25525 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ubp1-associated protein 2c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21250: 314370-319274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_250 0.0 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
2 Hb_000123_210 0.0807838198 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
3 Hb_007101_170 0.08470968 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
4 Hb_090804_010 0.0847164156 - - ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_004994_220 0.0850265738 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
6 Hb_001143_160 0.0856932528 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
7 Hb_002131_020 0.0877529446 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
8 Hb_000230_520 0.0905442844 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
9 Hb_001894_150 0.0911062414 - - nucleoredoxin, putative [Ricinus communis]
10 Hb_019654_190 0.0940359205 - - protein kinase, putative [Ricinus communis]
11 Hb_009627_010 0.0952344906 - - Protein dom-3, putative [Ricinus communis]
12 Hb_007943_130 0.0953055349 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
13 Hb_123352_020 0.096595011 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
14 Hb_004724_060 0.0970581453 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
15 Hb_126643_010 0.0973991509 - - Protein transport protein Sec24C, putative [Ricinus communis]
16 Hb_000270_760 0.097653886 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
17 Hb_001700_040 0.0982751536 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
18 Hb_000230_080 0.0983223676 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
19 Hb_000244_220 0.0988343494 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_010931_120 0.0992053713 - - myosin heavy chain-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000206_250 Hb_000206_250 Hb_000123_210 Hb_000123_210 Hb_000206_250--Hb_000123_210 Hb_007101_170 Hb_007101_170 Hb_000206_250--Hb_007101_170 Hb_090804_010 Hb_090804_010 Hb_000206_250--Hb_090804_010 Hb_004994_220 Hb_004994_220 Hb_000206_250--Hb_004994_220 Hb_001143_160 Hb_001143_160 Hb_000206_250--Hb_001143_160 Hb_002131_020 Hb_002131_020 Hb_000206_250--Hb_002131_020 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020 Hb_002400_310 Hb_002400_310 Hb_007101_170--Hb_002400_310 Hb_000676_110 Hb_000676_110 Hb_007101_170--Hb_000676_110 Hb_001790_020 Hb_001790_020 Hb_007101_170--Hb_001790_020 Hb_000030_040 Hb_000030_040 Hb_007101_170--Hb_000030_040 Hb_010175_020 Hb_010175_020 Hb_007101_170--Hb_010175_020 Hb_004204_020 Hb_004204_020 Hb_090804_010--Hb_004204_020 Hb_009627_010 Hb_009627_010 Hb_090804_010--Hb_009627_010 Hb_011318_010 Hb_011318_010 Hb_090804_010--Hb_011318_010 Hb_003362_040 Hb_003362_040 Hb_090804_010--Hb_003362_040 Hb_002805_070 Hb_002805_070 Hb_090804_010--Hb_002805_070 Hb_002740_110 Hb_002740_110 Hb_004994_220--Hb_002740_110 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_010174_110 Hb_010174_110 Hb_004994_220--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270 Hb_001143_160--Hb_123352_020 Hb_007163_090 Hb_007163_090 Hb_001143_160--Hb_007163_090 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_001143_160--Hb_000011_200 Hb_001680_010 Hb_001680_010 Hb_002131_020--Hb_001680_010 Hb_005993_020 Hb_005993_020 Hb_002131_020--Hb_005993_020 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002835_370 Hb_002835_370 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_002131_020--Hb_009627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2177 15.9429 7.39509 7.61895 23.067 24.0144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2468 9.434 24.9284 24.3516 9.5084

CAGE analysis