Hb_000030_040

Information

Type -
Description -
Location Contig30: 26565-30329
Sequence    

Annotation

kegg
ID rcu:RCOM_1121720
description yth domain-containing protein, putative
nr
ID XP_002525434.1
description yth domain-containing protein, putative [Ricinus communis]
swissprot
ID Q0VCZ3
description YTH domain-containing family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
trembl
ID B9SHG5
description Yth domain-containing protein, putative OS=Ricinus communis GN=RCOM_1121720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31481: 25853-29996 , PASA_asmbl_31482: 30142-30400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_040 0.0 - - yth domain-containing protein, putative [Ricinus communis]
2 Hb_001912_100 0.0714996304 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
3 Hb_002477_030 0.0734341418 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
4 Hb_000487_290 0.0802564956 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
5 Hb_075481_030 0.0802772022 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
6 Hb_001790_020 0.0807979772 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
7 Hb_106371_010 0.0817621846 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_007101_170 0.0826693672 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
9 Hb_001736_040 0.0836317107 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
10 Hb_000827_070 0.085161778 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_000046_010 0.0855640984 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
12 Hb_000072_350 0.0862645732 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
13 Hb_000676_110 0.0867724234 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
14 Hb_002248_080 0.0904586447 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
15 Hb_004162_280 0.0907096527 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
16 Hb_005276_210 0.0908642492 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
17 Hb_002477_280 0.0909052362 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
18 Hb_000051_070 0.0909834936 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
19 Hb_002400_310 0.0913899902 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
20 Hb_005188_050 0.0924706606 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000030_040 Hb_000030_040 Hb_001912_100 Hb_001912_100 Hb_000030_040--Hb_001912_100 Hb_002477_030 Hb_002477_030 Hb_000030_040--Hb_002477_030 Hb_000487_290 Hb_000487_290 Hb_000030_040--Hb_000487_290 Hb_075481_030 Hb_075481_030 Hb_000030_040--Hb_075481_030 Hb_001790_020 Hb_001790_020 Hb_000030_040--Hb_001790_020 Hb_106371_010 Hb_106371_010 Hb_000030_040--Hb_106371_010 Hb_004602_040 Hb_004602_040 Hb_001912_100--Hb_004602_040 Hb_000244_220 Hb_000244_220 Hb_001912_100--Hb_000244_220 Hb_000046_010 Hb_000046_010 Hb_001912_100--Hb_000046_010 Hb_003935_030 Hb_003935_030 Hb_001912_100--Hb_003935_030 Hb_001912_100--Hb_000487_290 Hb_001736_040 Hb_001736_040 Hb_002477_030--Hb_001736_040 Hb_000827_070 Hb_000827_070 Hb_002477_030--Hb_000827_070 Hb_181235_010 Hb_181235_010 Hb_002477_030--Hb_181235_010 Hb_001797_050 Hb_001797_050 Hb_002477_030--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_002477_030--Hb_005188_050 Hb_000487_290--Hb_005188_050 Hb_123352_020 Hb_123352_020 Hb_000487_290--Hb_123352_020 Hb_000487_290--Hb_000827_070 Hb_005731_030 Hb_005731_030 Hb_000487_290--Hb_005731_030 Hb_000025_360 Hb_000025_360 Hb_000487_290--Hb_000025_360 Hb_004724_060 Hb_004724_060 Hb_000487_290--Hb_004724_060 Hb_000521_260 Hb_000521_260 Hb_075481_030--Hb_000521_260 Hb_004162_280 Hb_004162_280 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_004724_320 Hb_004724_320 Hb_075481_030--Hb_004724_320 Hb_000861_070 Hb_000861_070 Hb_075481_030--Hb_000861_070 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_012634_010 Hb_012634_010 Hb_001790_020--Hb_012634_010 Hb_001571_040 Hb_001571_040 Hb_001790_020--Hb_001571_040 Hb_001790_020--Hb_106371_010 Hb_000321_070 Hb_000321_070 Hb_001790_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_001790_020--Hb_000160_040 Hb_000123_210 Hb_000123_210 Hb_001790_020--Hb_000123_210 Hb_003090_080 Hb_003090_080 Hb_106371_010--Hb_003090_080 Hb_106371_010--Hb_000160_040 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_033834_060 Hb_033834_060 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.67766 10.9587 2.8257 5.49588 17.511 13.9338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.70003 10.6897 9.38064 9.46684 5.11695

CAGE analysis