Hb_001736_040

Information

Type -
Description -
Location Contig1736: 49163-50416
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23160g
description POPTRDRAFT_755931; hypothetical protein
nr
ID XP_012089538.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067JT20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00461 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16529: 49164-51247
cDNA
(Sanger)
(ID:Location)		 013_F23.ab1: 50086-51244

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001736_040 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
2 Hb_000661_050 0.0552509037 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
3 Hb_002477_030 0.0553184657 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
4 Hb_000317_020 0.0581455468 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
5 Hb_000152_820 0.0630253984 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
6 Hb_000827_070 0.066974224 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
7 Hb_000977_070 0.0678921578 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
8 Hb_007586_030 0.0702854514 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
9 Hb_002876_110 0.0717227168 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004600_040 0.0733823848 - - -
11 Hb_000538_200 0.0733950381 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
12 Hb_004934_090 0.0751405649 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
13 Hb_000815_210 0.0753761897 - - uncoupling protein 3, partial [Manihot esculenta]
14 Hb_007757_110 0.0754206848 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
15 Hb_001797_050 0.0756264009 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
16 Hb_004724_200 0.0762440442 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
17 Hb_001301_200 0.0763184003 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
18 Hb_000051_070 0.0784406601 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
19 Hb_000101_240 0.0792060687 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
20 Hb_001541_020 0.0802360598 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]

Gene co-expression network

sample Hb_001736_040 Hb_001736_040 Hb_000661_050 Hb_000661_050 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_000317_020 Hb_000317_020 Hb_001736_040--Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_001736_040--Hb_000152_820 Hb_000827_070 Hb_000827_070 Hb_001736_040--Hb_000827_070 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070 Hb_002307_100 Hb_002307_100 Hb_000661_050--Hb_002307_100 Hb_000661_050--Hb_000317_020 Hb_004724_200 Hb_004724_200 Hb_000661_050--Hb_004724_200 Hb_000244_250 Hb_000244_250 Hb_000661_050--Hb_000244_250 Hb_004934_090 Hb_004934_090 Hb_000661_050--Hb_004934_090 Hb_002477_030--Hb_000827_070 Hb_181235_010 Hb_181235_010 Hb_002477_030--Hb_181235_010 Hb_000030_040 Hb_000030_040 Hb_002477_030--Hb_000030_040 Hb_001797_050 Hb_001797_050 Hb_002477_030--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_002477_030--Hb_005188_050 Hb_000317_020--Hb_000152_820 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_004600_040 Hb_004600_040 Hb_000317_020--Hb_004600_040 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_000827_070--Hb_005188_050 Hb_045793_010 Hb_045793_010 Hb_000827_070--Hb_045793_010 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001141_330 Hb_001141_330 Hb_000977_070--Hb_001141_330 Hb_001488_330 Hb_001488_330 Hb_000977_070--Hb_001488_330 Hb_000977_070--Hb_000827_070 Hb_000977_070--Hb_000152_820 Hb_000977_070--Hb_000317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0504 8.02267 2.46125 4.32489 13.6105 14.0472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.66103 9.44854 10.5015 6.14572 5.90544

CAGE analysis