Hb_001269_550

Information

Type -
Description -
Location Contig1269: 589832-591852
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03510g
description hypothetical protein
nr
ID XP_006368499.1
description hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
swissprot
ID Q9SAH2
description Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1
trembl
ID U5GND9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03510g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_550 0.0 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
2 Hb_002496_030 0.0543193295 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
3 Hb_019654_190 0.0656826149 - - protein kinase, putative [Ricinus communis]
4 Hb_000776_110 0.0671048115 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
5 Hb_000152_820 0.0696291334 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
6 Hb_006400_060 0.0698166776 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
7 Hb_002016_110 0.0706914493 - - transducin family protein [Populus trichocarpa]
8 Hb_000062_240 0.0716592584 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
9 Hb_000808_230 0.0727179856 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
10 Hb_004837_040 0.0729743096 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
11 Hb_000030_300 0.0765492699 - - Thioredoxin, putative [Ricinus communis]
12 Hb_001975_160 0.0772998609 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001159_100 0.0785689032 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
14 Hb_007951_050 0.0791539402 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003464_060 0.081789921 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
16 Hb_000317_020 0.0825018115 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
17 Hb_015306_020 0.0830109671 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
18 Hb_000796_220 0.0843305234 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
19 Hb_175338_030 0.0849783317 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
20 Hb_000291_110 0.086026462 - - eukaryotic translation initiation factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_001269_550 Hb_001269_550 Hb_002496_030 Hb_002496_030 Hb_001269_550--Hb_002496_030 Hb_019654_190 Hb_019654_190 Hb_001269_550--Hb_019654_190 Hb_000776_110 Hb_000776_110 Hb_001269_550--Hb_000776_110 Hb_000152_820 Hb_000152_820 Hb_001269_550--Hb_000152_820 Hb_006400_060 Hb_006400_060 Hb_001269_550--Hb_006400_060 Hb_002016_110 Hb_002016_110 Hb_001269_550--Hb_002016_110 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_000062_240 Hb_000062_240 Hb_019654_190--Hb_000062_240 Hb_000032_100 Hb_000032_100 Hb_019654_190--Hb_000032_100 Hb_007163_090 Hb_007163_090 Hb_019654_190--Hb_007163_090 Hb_000577_010 Hb_000577_010 Hb_019654_190--Hb_000577_010 Hb_019654_190--Hb_004837_040 Hb_000776_110--Hb_000152_820 Hb_001159_100 Hb_001159_100 Hb_000776_110--Hb_001159_100 Hb_001975_160 Hb_001975_160 Hb_000776_110--Hb_001975_160 Hb_002039_010 Hb_002039_010 Hb_000776_110--Hb_002039_010 Hb_000317_020 Hb_000317_020 Hb_000776_110--Hb_000317_020 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_000152_820--Hb_000317_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000483_200 Hb_000483_200 Hb_006400_060--Hb_000483_200 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_003032_040 Hb_003032_040 Hb_006400_060--Hb_003032_040 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_006400_060--Hb_002016_110 Hb_006400_030 Hb_006400_030 Hb_006400_060--Hb_006400_030 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_002016_110--Hb_000030_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36673 0.766007 0.527207 0.350439 1.33693 1.56827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14316 1.07073 1.8991 1.05831 0.585137

CAGE analysis