Hb_003032_040

Information

Type -
Description -
Location Contig3032: 41241-48151
Sequence    

Annotation

kegg
ID vvi:100245744
description zinc finger CCCH domain-containing protein 13
nr
ID XP_012078697.1
description PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
swissprot
ID Q28IQ9
description Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1
trembl
ID A0A067KKJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13264 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 25-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31993: 41284-47074 , PASA_asmbl_31994: 44349-44516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
2 Hb_001818_090 0.0614031284 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006400_030 0.0638082225 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
4 Hb_006400_060 0.0652053888 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
5 Hb_000483_200 0.0662086808 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_024185_020 0.0688306106 - - -
7 Hb_002449_020 0.0692750834 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
8 Hb_007441_120 0.0697221001 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
9 Hb_002016_110 0.072320707 - - transducin family protein [Populus trichocarpa]
10 Hb_005663_060 0.0752355335 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
11 Hb_002253_070 0.0755551327 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
12 Hb_000206_210 0.0782706602 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
13 Hb_000107_620 0.0797070158 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
14 Hb_001454_210 0.0798154721 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
15 Hb_004109_090 0.0798899588 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_009838_080 0.0809985946 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_004254_120 0.0816422637 - - conserved hypothetical protein [Ricinus communis]
18 Hb_061090_010 0.0836391859 - - RAN BINDING protein 1 [Populus trichocarpa]
19 Hb_011571_010 0.0845034288 - - Metal tolerance protein C4, putative [Ricinus communis]
20 Hb_001811_050 0.0848775813 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003032_040 Hb_003032_040 Hb_001818_090 Hb_001818_090 Hb_003032_040--Hb_001818_090 Hb_006400_030 Hb_006400_030 Hb_003032_040--Hb_006400_030 Hb_006400_060 Hb_006400_060 Hb_003032_040--Hb_006400_060 Hb_000483_200 Hb_000483_200 Hb_003032_040--Hb_000483_200 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_004109_090 Hb_004109_090 Hb_001818_090--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_001818_090--Hb_005663_060 Hb_007441_120 Hb_007441_120 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_006400_030--Hb_000483_200 Hb_006400_030--Hb_006400_060 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620 Hb_006400_060--Hb_000483_200 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_002016_110 Hb_002016_110 Hb_006400_060--Hb_002016_110 Hb_007426_030 Hb_007426_030 Hb_000483_200--Hb_007426_030 Hb_000483_200--Hb_002016_110 Hb_001959_210 Hb_001959_210 Hb_000483_200--Hb_001959_210 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110 Hb_000174_090 Hb_000174_090 Hb_002449_020--Hb_000174_090 Hb_000832_140 Hb_000832_140 Hb_002449_020--Hb_000832_140 Hb_000529_190 Hb_000529_190 Hb_002449_020--Hb_000529_190 Hb_001811_050 Hb_001811_050 Hb_002449_020--Hb_001811_050 Hb_001771_090 Hb_001771_090 Hb_002449_020--Hb_001771_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.0499 10.3948 13.2088 16.8372 30.9806 39.6972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.5976 38.9057 47.3831 29.5583 20.1609

CAGE analysis