Hb_001771_090

Information

Type -
Description -
Location Contig1771: 93686-97711
Sequence    

Annotation

kegg
ID rcu:RCOM_1280080
description hypothetical protein
nr
ID XP_012072806.1
description PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KN65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07938 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17000: 93958-97469 , PASA_asmbl_17001: 96720-97469 , PASA_asmbl_17002: 97121-97288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001771_090 0.0 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
2 Hb_000103_180 0.0768406425 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
3 Hb_000032_570 0.0791145144 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
4 Hb_002449_020 0.0807060393 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
5 Hb_002079_010 0.0813985407 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
6 Hb_006692_030 0.0815852696 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
7 Hb_000483_200 0.0828178641 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_000321_070 0.0850156418 - - protein with unknown function [Ricinus communis]
9 Hb_000617_020 0.0850742464 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
10 Hb_000291_220 0.0866400776 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
11 Hb_000532_070 0.0867620869 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
12 Hb_001454_210 0.0885619383 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
13 Hb_002149_020 0.0893978571 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
14 Hb_063090_010 0.0895444352 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_039837_010 0.0908927769 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
16 Hb_028872_140 0.0913441812 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
17 Hb_001135_160 0.0916822197 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
18 Hb_009111_050 0.0918582539 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
19 Hb_001811_050 0.0921905423 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
20 Hb_003032_040 0.092892452 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]

Gene co-expression network

sample Hb_001771_090 Hb_001771_090 Hb_000103_180 Hb_000103_180 Hb_001771_090--Hb_000103_180 Hb_000032_570 Hb_000032_570 Hb_001771_090--Hb_000032_570 Hb_002449_020 Hb_002449_020 Hb_001771_090--Hb_002449_020 Hb_002079_010 Hb_002079_010 Hb_001771_090--Hb_002079_010 Hb_006692_030 Hb_006692_030 Hb_001771_090--Hb_006692_030 Hb_000483_200 Hb_000483_200 Hb_001771_090--Hb_000483_200 Hb_007426_030 Hb_007426_030 Hb_000103_180--Hb_007426_030 Hb_000103_180--Hb_002079_010 Hb_004724_200 Hb_004724_200 Hb_000103_180--Hb_004724_200 Hb_004109_090 Hb_004109_090 Hb_000103_180--Hb_004109_090 Hb_002811_360 Hb_002811_360 Hb_000103_180--Hb_002811_360 Hb_000103_180--Hb_000483_200 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_000032_570--Hb_006692_030 Hb_000174_090 Hb_000174_090 Hb_002449_020--Hb_000174_090 Hb_003032_040 Hb_003032_040 Hb_002449_020--Hb_003032_040 Hb_000832_140 Hb_000832_140 Hb_002449_020--Hb_000832_140 Hb_000529_190 Hb_000529_190 Hb_002449_020--Hb_000529_190 Hb_001811_050 Hb_001811_050 Hb_002449_020--Hb_001811_050 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_002079_010--Hb_007426_030 Hb_006400_060 Hb_006400_060 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020 Hb_009133_010 Hb_009133_010 Hb_006692_030--Hb_009133_010 Hb_007218_080 Hb_007218_080 Hb_006692_030--Hb_007218_080 Hb_000889_020 Hb_000889_020 Hb_006692_030--Hb_000889_020 Hb_001789_240 Hb_001789_240 Hb_006692_030--Hb_001789_240 Hb_000120_500 Hb_000120_500 Hb_006692_030--Hb_000120_500 Hb_000483_200--Hb_006400_060 Hb_000483_200--Hb_007426_030 Hb_006400_030 Hb_006400_030 Hb_000483_200--Hb_006400_030 Hb_000483_200--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_000483_200--Hb_002016_110 Hb_001959_210 Hb_001959_210 Hb_000483_200--Hb_001959_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3395 3.09048 4.34941 6.02187 16.8002 22.3537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.266 16.8668 14.5126 13.4878 5.78005

CAGE analysis