Hb_001811_050

Information

Type -
Description -
Location Contig1811: 34532-40602
Sequence    

Annotation

kegg
ID pop:POPTR_0017s07060g
description POPTRDRAFT_1104816; hypothetical protein
nr
ID XP_012081365.1
description PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
swissprot
ID Q93YW0
description Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1
trembl
ID A0A067K187
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18758 PE=4 SV=1
Gene Ontology
ID GO:0000304
description protein executer chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17567: 40306-41647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_050 0.0 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
2 Hb_000019_210 0.0590248254 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
3 Hb_000832_140 0.0678372071 - - actin depolymerizing factor 4 [Hevea brasiliensis]
4 Hb_002214_040 0.0678404363 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_002043_190 0.0747236489 - - rwd domain-containing protein, putative [Ricinus communis]
6 Hb_011571_010 0.078818652 - - Metal tolerance protein C4, putative [Ricinus communis]
7 Hb_002449_020 0.07943331 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
8 Hb_000529_190 0.0842855451 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
9 Hb_000174_090 0.0844416583 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
10 Hb_003032_040 0.0848775813 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
11 Hb_008878_030 0.0850298407 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
12 Hb_001818_090 0.0861503461 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000291_220 0.0873665489 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
14 Hb_003050_080 0.0885542782 - - 40S ribosomal protein S14, putative [Ricinus communis]
15 Hb_006400_030 0.0887252751 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
16 Hb_005993_040 0.089765298 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
17 Hb_001771_090 0.0921905423 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
18 Hb_007317_210 0.0936393198 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
19 Hb_063716_050 0.0942437616 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
20 Hb_007576_040 0.096332107 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]

Gene co-expression network

sample Hb_001811_050 Hb_001811_050 Hb_000019_210 Hb_000019_210 Hb_001811_050--Hb_000019_210 Hb_000832_140 Hb_000832_140 Hb_001811_050--Hb_000832_140 Hb_002214_040 Hb_002214_040 Hb_001811_050--Hb_002214_040 Hb_002043_190 Hb_002043_190 Hb_001811_050--Hb_002043_190 Hb_011571_010 Hb_011571_010 Hb_001811_050--Hb_011571_010 Hb_002449_020 Hb_002449_020 Hb_001811_050--Hb_002449_020 Hb_000019_210--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000019_210--Hb_005993_040 Hb_003050_080 Hb_003050_080 Hb_000019_210--Hb_003050_080 Hb_001489_060 Hb_001489_060 Hb_000019_210--Hb_001489_060 Hb_007576_040 Hb_007576_040 Hb_000019_210--Hb_007576_040 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_000832_140--Hb_002214_040 Hb_000832_140--Hb_003050_080 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000832_140--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_000832_140--Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_002043_190--Hb_005993_040 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_007317_210 Hb_007317_210 Hb_011571_010--Hb_007317_210 Hb_112798_030 Hb_112798_030 Hb_011571_010--Hb_112798_030 Hb_000107_620 Hb_000107_620 Hb_011571_010--Hb_000107_620 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_006541_030 Hb_006541_030 Hb_011571_010--Hb_006541_030 Hb_002449_020--Hb_000174_090 Hb_003032_040 Hb_003032_040 Hb_002449_020--Hb_003032_040 Hb_002449_020--Hb_000832_140 Hb_002449_020--Hb_000529_190 Hb_001771_090 Hb_001771_090 Hb_002449_020--Hb_001771_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13225 0.552941 1.45455 1.08047 2.47204 2.70346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43978 3.53038 2.72045 2.20555 0.964854

CAGE analysis