Hb_002449_020

Information

Type -
Description -
Location Contig2449: 96483-99292
Sequence    

Annotation

kegg
ID csv:101213428
description tRNA (guanine(9)-N1)-methyltransferase-like
nr
ID XP_004139517.1
description PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
swissprot
ID O14214
description tRNA (guanine(9)-N1)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm10 PE=1 SV=1
trembl
ID A0A0A0LYJ3
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173210 PE=4 SV=1
Gene Ontology
ID GO:0008168
description trna (guanine -n1)-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25537: 96543-99226
cDNA
(Sanger)
(ID:Location)		 004_K22.ab1: 98199-99218

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002449_020 0.0 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
2 Hb_000174_090 0.0604959062 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
3 Hb_003032_040 0.0692750834 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
4 Hb_000832_140 0.0727452472 - - actin depolymerizing factor 4 [Hevea brasiliensis]
5 Hb_000529_190 0.0793461728 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
6 Hb_001811_050 0.07943331 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
7 Hb_001771_090 0.0807060393 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
8 Hb_006400_030 0.081489121 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
9 Hb_000061_320 0.0833871265 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
10 Hb_000602_010 0.0844003345 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
11 Hb_002214_040 0.0852102386 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_003976_010 0.0878437031 - - methionine aminopeptidase, putative [Ricinus communis]
13 Hb_001691_210 0.088121762 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
14 Hb_024185_020 0.0886736405 - - -
15 Hb_002477_070 0.0889092708 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
16 Hb_026527_030 0.0890327215 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
17 Hb_000115_330 0.0892246025 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
18 Hb_001818_090 0.089585566 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007441_120 0.0902098053 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
20 Hb_000979_230 0.0918560048 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002449_020 Hb_002449_020 Hb_000174_090 Hb_000174_090 Hb_002449_020--Hb_000174_090 Hb_003032_040 Hb_003032_040 Hb_002449_020--Hb_003032_040 Hb_000832_140 Hb_000832_140 Hb_002449_020--Hb_000832_140 Hb_000529_190 Hb_000529_190 Hb_002449_020--Hb_000529_190 Hb_001811_050 Hb_001811_050 Hb_002449_020--Hb_001811_050 Hb_001771_090 Hb_001771_090 Hb_002449_020--Hb_001771_090 Hb_000174_090--Hb_000832_140 Hb_000926_250 Hb_000926_250 Hb_000174_090--Hb_000926_250 Hb_002078_150 Hb_002078_150 Hb_000174_090--Hb_002078_150 Hb_001477_110 Hb_001477_110 Hb_000174_090--Hb_001477_110 Hb_033834_040 Hb_033834_040 Hb_000174_090--Hb_033834_040 Hb_001818_090 Hb_001818_090 Hb_003032_040--Hb_001818_090 Hb_006400_030 Hb_006400_030 Hb_003032_040--Hb_006400_030 Hb_006400_060 Hb_006400_060 Hb_003032_040--Hb_006400_060 Hb_000483_200 Hb_000483_200 Hb_003032_040--Hb_000483_200 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000832_140--Hb_063716_050 Hb_000832_140--Hb_000529_190 Hb_000529_190--Hb_002214_040 Hb_000529_190--Hb_063716_050 Hb_000529_190--Hb_000103_560 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000019_210 Hb_000019_210 Hb_001811_050--Hb_000019_210 Hb_001811_050--Hb_000832_140 Hb_001811_050--Hb_002214_040 Hb_002043_190 Hb_002043_190 Hb_001811_050--Hb_002043_190 Hb_011571_010 Hb_011571_010 Hb_001811_050--Hb_011571_010 Hb_000103_180 Hb_000103_180 Hb_001771_090--Hb_000103_180 Hb_000032_570 Hb_000032_570 Hb_001771_090--Hb_000032_570 Hb_002079_010 Hb_002079_010 Hb_001771_090--Hb_002079_010 Hb_006692_030 Hb_006692_030 Hb_001771_090--Hb_006692_030 Hb_001771_090--Hb_000483_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2078 7.91727 14.1082 23.2094 44.9441 47.7805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.8537 55.3202 55.1413 36.305 15.2035

CAGE analysis