Hb_024185_020

Information

Type -
Description -
Location Contig24185: 25272-37160
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25319: 25632-26930 , PASA_asmbl_25320: 27322-27763 , PASA_asmbl_25321: 32199-36985 , PASA_asmbl_25323: 33611-34043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024185_020 0.0 - - -
2 Hb_000206_210 0.0661040802 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
3 Hb_004254_120 0.0663770109 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003032_040 0.0688306106 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
5 Hb_026527_030 0.0691735473 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
6 Hb_009838_080 0.0695551876 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
7 Hb_000648_110 0.0740426944 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
8 Hb_002477_070 0.0764242657 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
9 Hb_000236_070 0.0776902846 - - conserved hypothetical protein [Ricinus communis]
10 Hb_024714_010 0.0782156886 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
11 Hb_001360_050 0.0785478549 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
12 Hb_020000_010 0.078671223 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
13 Hb_001833_110 0.0787000678 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006400_030 0.0811692461 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
15 Hb_001789_070 0.0824244243 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
16 Hb_025240_040 0.0830921074 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
17 Hb_011316_040 0.0833790875 - - peptidase, putative [Ricinus communis]
18 Hb_001959_210 0.0849355113 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
19 Hb_032202_190 0.0852881543 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
20 Hb_127552_030 0.0869949405 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]

Gene co-expression network

sample Hb_024185_020 Hb_024185_020 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110 Hb_000206_210--Hb_004254_120 Hb_000777_040 Hb_000777_040 Hb_000206_210--Hb_000777_040 Hb_000206_210--Hb_009838_080 Hb_000928_210 Hb_000928_210 Hb_000206_210--Hb_000928_210 Hb_000173_290 Hb_000173_290 Hb_000206_210--Hb_000173_290 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_004254_120--Hb_000928_210 Hb_001818_090 Hb_001818_090 Hb_003032_040--Hb_001818_090 Hb_006400_030 Hb_006400_030 Hb_003032_040--Hb_006400_030 Hb_006400_060 Hb_006400_060 Hb_003032_040--Hb_006400_060 Hb_000483_200 Hb_000483_200 Hb_003032_040--Hb_000483_200 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_000331_080 Hb_000331_080 Hb_026527_030--Hb_000331_080 Hb_002253_070 Hb_002253_070 Hb_026527_030--Hb_002253_070 Hb_009954_040 Hb_009954_040 Hb_026527_030--Hb_009954_040 Hb_004994_100 Hb_004994_100 Hb_026527_030--Hb_004994_100 Hb_002685_020 Hb_002685_020 Hb_026527_030--Hb_002685_020 Hb_002214_040 Hb_002214_040 Hb_009838_080--Hb_002214_040 Hb_000107_620 Hb_000107_620 Hb_009838_080--Hb_000107_620 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_011316_040 Hb_011316_040 Hb_000648_110--Hb_011316_040 Hb_001277_330 Hb_001277_330 Hb_000648_110--Hb_001277_330 Hb_002687_110 Hb_002687_110 Hb_000648_110--Hb_002687_110 Hb_000236_070 Hb_000236_070 Hb_000648_110--Hb_000236_070 Hb_000409_020 Hb_000409_020 Hb_000648_110--Hb_000409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74358 0.763488 0.957258 1.49403 2.48778 2.79451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29208 3.70082 3.86214 2.1333 2.08104

CAGE analysis