Hb_000236_070

Information

Type -
Description -
Location Contig236: 63050-64384
Sequence    

Annotation

kegg
ID rcu:RCOM_1018040
description hypothetical protein
nr
ID XP_002518049.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1018040 PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna-directed rna polymerase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002205_070 0.0685845297 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
3 Hb_011316_040 0.0721327472 - - peptidase, putative [Ricinus communis]
4 Hb_024185_020 0.0776902846 - - -
5 Hb_000107_620 0.0825891272 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
6 Hb_000648_110 0.0830393757 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
7 Hb_009838_080 0.0868765363 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
8 Hb_000206_210 0.0900319597 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
9 Hb_004109_190 0.0908405804 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
10 Hb_024714_010 0.0923627923 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
11 Hb_001898_160 0.0935992269 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
12 Hb_002496_050 0.0937452811 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
13 Hb_001959_070 0.0940000534 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
14 Hb_002963_020 0.0942442976 - - conserved hypothetical protein [Ricinus communis]
15 Hb_022693_060 0.0947337109 - - -
16 Hb_000574_390 0.0950931697 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
17 Hb_008554_070 0.0961534468 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
18 Hb_003032_040 0.09675268 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
19 Hb_000505_010 0.0993082282 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
20 Hb_000928_210 0.0997439502 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_070 Hb_000236_070 Hb_002205_070 Hb_002205_070 Hb_000236_070--Hb_002205_070 Hb_011316_040 Hb_011316_040 Hb_000236_070--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000236_070--Hb_024185_020 Hb_000107_620 Hb_000107_620 Hb_000236_070--Hb_000107_620 Hb_000648_110 Hb_000648_110 Hb_000236_070--Hb_000648_110 Hb_009838_080 Hb_009838_080 Hb_000236_070--Hb_009838_080 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_002205_070--Hb_000107_620 Hb_002205_070--Hb_009838_080 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_001277_330 Hb_001277_330 Hb_011316_040--Hb_001277_330 Hb_011316_040--Hb_006541_030 Hb_011316_040--Hb_000648_110 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_024185_020--Hb_009838_080 Hb_024185_020--Hb_000648_110 Hb_000107_620--Hb_009838_080 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_000648_110--Hb_001277_330 Hb_002687_110 Hb_002687_110 Hb_000648_110--Hb_002687_110 Hb_000409_020 Hb_000409_020 Hb_000648_110--Hb_000409_020 Hb_002214_040 Hb_002214_040 Hb_009838_080--Hb_002214_040 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3987 4.88264 5.47951 6.90469 15.2055 20.3359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8859 20.1968 23.0893 8.03074 16.6837

CAGE analysis