Hb_000648_110

Information

Type -
Description -
Location Contig648: 134092-138115
Sequence    

Annotation

kegg
ID tcc:TCM_041781
description Major facilitator superfamily protein isoform 1
nr
ID XP_012066968.1
description PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
swissprot
ID Q0WWW9
description D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=2 SV=2
trembl
ID A0A067L4V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02943 PE=3 SV=1
Gene Ontology
ID GO:0009941
description d-xylose-proton symporter-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52428: 123748-133284 , PASA_asmbl_52429: 123823-133204 , PASA_asmbl_52431: 134313-138073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_110 0.0 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
2 Hb_011316_040 0.0722882002 - - peptidase, putative [Ricinus communis]
3 Hb_024185_020 0.0740426944 - - -
4 Hb_001277_330 0.0815071076 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
5 Hb_002687_110 0.0815666533 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
6 Hb_000236_070 0.0830393757 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000409_020 0.084917155 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
8 Hb_003943_040 0.0923842978 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000431_010 0.0956522001 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
10 Hb_000096_090 0.0969432776 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
11 Hb_000754_040 0.0974920382 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
12 Hb_026527_030 0.0983546959 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
13 Hb_004109_190 0.0987518507 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
14 Hb_006915_050 0.1005534739 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
15 Hb_000206_210 0.1018118759 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
16 Hb_002496_050 0.102542834 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
17 Hb_004994_100 0.1027815906 - - acyl-CoA thioesterase, putative [Ricinus communis]
18 Hb_009838_080 0.1029462769 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
19 Hb_003206_070 0.1037690013 - - organic anion transporter, putative [Ricinus communis]
20 Hb_003032_040 0.1050134888 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]

Gene co-expression network

sample Hb_000648_110 Hb_000648_110 Hb_011316_040 Hb_011316_040 Hb_000648_110--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000648_110--Hb_024185_020 Hb_001277_330 Hb_001277_330 Hb_000648_110--Hb_001277_330 Hb_002687_110 Hb_002687_110 Hb_000648_110--Hb_002687_110 Hb_000236_070 Hb_000236_070 Hb_000648_110--Hb_000236_070 Hb_000409_020 Hb_000409_020 Hb_000648_110--Hb_000409_020 Hb_011316_040--Hb_001277_330 Hb_011316_040--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_011316_040--Hb_006541_030 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_002205_070 Hb_002205_070 Hb_000236_070--Hb_002205_070 Hb_000236_070--Hb_024185_020 Hb_000107_620 Hb_000107_620 Hb_000236_070--Hb_000107_620 Hb_000236_070--Hb_009838_080 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000898_040 Hb_000898_040 Hb_000409_020--Hb_000898_040 Hb_004109_090 Hb_004109_090 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5284 7.25677 13.3507 20.2008 33.4266 32.2764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.356 34.0356 54.1971 16.2346 24.995

CAGE analysis