Hb_002942_190

Information

Type -
Description -
Location Contig2942: 170906-180873
Sequence    

Annotation

kegg
ID rcu:RCOM_1504220
description poly(A) polymerase, putative (EC:2.7.7.19)
nr
ID XP_002511109.1
description poly(A) polymerase, putative [Ricinus communis]
swissprot
ID P0ABF1
description Poly(A) polymerase I OS=Escherichia coli (strain K12) GN=pcnB PE=1 SV=2
trembl
ID B9RA84
description Poly(A) polymerase, putative OS=Ricinus communis GN=RCOM_1504220 PE=3 SV=1
Gene Ontology
ID GO:0003723
description polynucleotide adenylyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30809: 171028-171708 , PASA_asmbl_30811: 175570-180841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_190 0.0 - - poly(A) polymerase, putative [Ricinus communis]
2 Hb_026549_040 0.0511739047 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
3 Hb_000107_620 0.0751858344 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
4 Hb_000656_400 0.0770034309 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
5 Hb_008221_140 0.0776086093 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
6 Hb_001292_020 0.0776314022 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
7 Hb_002044_080 0.0801300419 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
8 Hb_002963_020 0.0815452002 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002686_020 0.0819268306 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
10 Hb_006913_030 0.0829062011 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
11 Hb_002739_100 0.0848011835 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_001552_020 0.0854061293 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
13 Hb_000676_180 0.0857349381 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
14 Hb_002205_070 0.0861462048 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
15 Hb_002027_250 0.0897618425 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_006502_090 0.0899887762 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
17 Hb_000206_210 0.0902997274 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
18 Hb_118707_030 0.0905627494 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
19 Hb_000479_090 0.0917362342 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
20 Hb_000085_050 0.0919614965 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_190 Hb_002942_190 Hb_026549_040 Hb_026549_040 Hb_002942_190--Hb_026549_040 Hb_000107_620 Hb_000107_620 Hb_002942_190--Hb_000107_620 Hb_000656_400 Hb_000656_400 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_001292_020 Hb_001292_020 Hb_002942_190--Hb_001292_020 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080 Hb_026549_040--Hb_001292_020 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_002686_020 Hb_002686_020 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_012675_050 Hb_012675_050 Hb_026549_040--Hb_012675_050 Hb_009838_080 Hb_009838_080 Hb_000107_620--Hb_009838_080 Hb_002205_070 Hb_002205_070 Hb_000107_620--Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_005463_040 Hb_005463_040 Hb_008221_140--Hb_005463_040 Hb_000676_180 Hb_000676_180 Hb_008221_140--Hb_000676_180 Hb_002183_090 Hb_002183_090 Hb_008221_140--Hb_002183_090 Hb_001226_040 Hb_001226_040 Hb_008221_140--Hb_001226_040 Hb_000167_140 Hb_000167_140 Hb_008221_140--Hb_000167_140 Hb_000085_050 Hb_000085_050 Hb_008221_140--Hb_000085_050 Hb_001292_020--Hb_002686_020 Hb_004048_110 Hb_004048_110 Hb_001292_020--Hb_004048_110 Hb_008878_030 Hb_008878_030 Hb_001292_020--Hb_008878_030 Hb_002232_440 Hb_002232_440 Hb_001292_020--Hb_002232_440 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_006502_090 Hb_006502_090 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_002044_080--Hb_000085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6723 6.64027 4.78706 4.29066 10.2962 9.84848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9032 19.3303 11.5386 6.71924 9.44728

CAGE analysis