Hb_001292_020

Information

Type -
Description -
Location Contig1292: 51759-56456
Sequence    

Annotation

kegg
ID pxb:103959996
description glycine-rich cell wall structural protein 1-like
nr
ID XP_011095061.1
description PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID A0A067KZY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06702 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08799: 51895-56425 , PASA_asmbl_08800: 54317-54422 , PASA_asmbl_08801: 54685-55026 , PASA_asmbl_08802: 55085-55417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001292_020 0.0 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
2 Hb_026549_040 0.0612115234 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
3 Hb_002942_190 0.0776314022 - - poly(A) polymerase, putative [Ricinus communis]
4 Hb_002686_020 0.0780399014 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
5 Hb_004048_110 0.0780621501 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
6 Hb_008878_030 0.0804200419 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
7 Hb_002232_440 0.0825447458 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
8 Hb_012725_050 0.0848362099 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
9 Hb_009838_080 0.0865119172 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_007416_030 0.0876473418 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
11 Hb_006031_020 0.0876915203 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
12 Hb_002928_130 0.0879935871 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
13 Hb_008648_010 0.0880805766 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
14 Hb_009686_030 0.088706652 - - -
15 Hb_008221_140 0.08920426 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
16 Hb_000331_080 0.0894210206 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
17 Hb_010080_090 0.0902129543 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
18 Hb_003683_120 0.0924364372 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001246_060 0.0931595683 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001540_010 0.0932852711 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]

Gene co-expression network

sample Hb_001292_020 Hb_001292_020 Hb_026549_040 Hb_026549_040 Hb_001292_020--Hb_026549_040 Hb_002942_190 Hb_002942_190 Hb_001292_020--Hb_002942_190 Hb_002686_020 Hb_002686_020 Hb_001292_020--Hb_002686_020 Hb_004048_110 Hb_004048_110 Hb_001292_020--Hb_004048_110 Hb_008878_030 Hb_008878_030 Hb_001292_020--Hb_008878_030 Hb_002232_440 Hb_002232_440 Hb_001292_020--Hb_002232_440 Hb_026549_040--Hb_002942_190 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_012675_050 Hb_012675_050 Hb_026549_040--Hb_012675_050 Hb_000107_620 Hb_000107_620 Hb_002942_190--Hb_000107_620 Hb_000656_400 Hb_000656_400 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_002686_020--Hb_008878_030 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_004048_110--Hb_008878_030 Hb_153112_020 Hb_153112_020 Hb_004048_110--Hb_153112_020 Hb_002214_040 Hb_002214_040 Hb_004048_110--Hb_002214_040 Hb_012725_050 Hb_012725_050 Hb_004048_110--Hb_012725_050 Hb_001545_140 Hb_001545_140 Hb_004048_110--Hb_001545_140 Hb_008878_030--Hb_000331_080 Hb_008878_030--Hb_003050_080 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_002928_130 Hb_002928_130 Hb_002232_440--Hb_002928_130 Hb_007154_020 Hb_007154_020 Hb_002232_440--Hb_007154_020 Hb_002232_440--Hb_001540_010 Hb_010921_010 Hb_010921_010 Hb_002232_440--Hb_010921_010 Hb_000698_030 Hb_000698_030 Hb_002232_440--Hb_000698_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.3401 14.3771 23.756 9.52803 34.1235 30.2053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.8779 73.0367 45.8082 26.175 28.4561

CAGE analysis