Hb_026549_040

Information

Type -
Description -
Location Contig26549: 9756-10811
Sequence    

Annotation

kegg
ID rcu:RCOM_0294980
description hypothetical protein
nr
ID XP_012074866.1
description PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LS48
description protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana GN=SG1 PE=1 SV=1
trembl
ID A0A067KKP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09016 PE=4 SV=1
Gene Ontology
ID GO:0009543
description protein slow green chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27740: 9878-10272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026549_040 0.0 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
2 Hb_002942_190 0.0511739047 - - poly(A) polymerase, putative [Ricinus communis]
3 Hb_001292_020 0.0612115234 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
4 Hb_000479_090 0.0759445248 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
5 Hb_002686_020 0.0769182346 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
6 Hb_000384_100 0.0784558959 - - hydrolase, putative [Ricinus communis]
7 Hb_012675_050 0.0822876966 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003683_120 0.085068363 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000676_180 0.0863987035 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
10 Hb_000046_050 0.088038912 - - PREDICTED: LEC14B homolog [Jatropha curcas]
11 Hb_000059_370 0.0885844115 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
12 Hb_008221_140 0.0904451228 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
13 Hb_001246_060 0.0910637309 - - ATP binding protein, putative [Ricinus communis]
14 Hb_028486_030 0.0914321108 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
15 Hb_008648_010 0.0917846247 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
16 Hb_027380_050 0.0923869588 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
17 Hb_001828_060 0.0924900842 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
18 Hb_000656_400 0.0932742163 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
19 Hb_001105_030 0.0953022347 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
20 Hb_032258_030 0.0956888169 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]

Gene co-expression network

sample Hb_026549_040 Hb_026549_040 Hb_002942_190 Hb_002942_190 Hb_026549_040--Hb_002942_190 Hb_001292_020 Hb_001292_020 Hb_026549_040--Hb_001292_020 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_002686_020 Hb_002686_020 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_012675_050 Hb_012675_050 Hb_026549_040--Hb_012675_050 Hb_000107_620 Hb_000107_620 Hb_002942_190--Hb_000107_620 Hb_000656_400 Hb_000656_400 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_002942_190--Hb_001292_020 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080 Hb_001292_020--Hb_002686_020 Hb_004048_110 Hb_004048_110 Hb_001292_020--Hb_004048_110 Hb_008878_030 Hb_008878_030 Hb_001292_020--Hb_008878_030 Hb_002232_440 Hb_002232_440 Hb_001292_020--Hb_002232_440 Hb_000479_090--Hb_000384_100 Hb_000059_370 Hb_000059_370 Hb_000479_090--Hb_000059_370 Hb_000920_110 Hb_000920_110 Hb_000479_090--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_000479_090--Hb_004127_020 Hb_000676_180 Hb_000676_180 Hb_000479_090--Hb_000676_180 Hb_000479_090--Hb_002686_020 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_002686_020--Hb_008878_030 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_000384_100--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000384_100--Hb_010068_020 Hb_002183_090 Hb_002183_090 Hb_000384_100--Hb_002183_090 Hb_000230_510 Hb_000230_510 Hb_000384_100--Hb_000230_510 Hb_000384_100--Hb_000920_110 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_000107_160 Hb_000107_160 Hb_012675_050--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_012675_050--Hb_000061_210 Hb_000046_050 Hb_000046_050 Hb_012675_050--Hb_000046_050 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_012675_050--Hb_002408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.61298 4.88612 4.8872 3.33221 7.64477 7.49164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9378 18.5554 9.08416 5.95603 8.56937

CAGE analysis