Hb_008878_030

Information

Type -
Description -
Location Contig8878: 25179-37698
Sequence    

Annotation

kegg
ID mus:103968691
description uncharacterized protein At1g10890-like
nr
ID XP_009380262.1
description PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
swissprot
ID P0CB26
description Uncharacterized protein At1g10890 OS=Arabidopsis thaliana GN=At1g10890 PE=4 SV=1
trembl
ID M0RJM7
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61529: 25212-37681 , PASA_asmbl_61530: 33132-33533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008878_030 0.0 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
2 Hb_000331_080 0.0581497215 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
3 Hb_003050_080 0.0609688686 - - 40S ribosomal protein S14, putative [Ricinus communis]
4 Hb_002686_020 0.0611990105 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
5 Hb_000832_140 0.0635890587 - - actin depolymerizing factor 4 [Hevea brasiliensis]
6 Hb_004048_110 0.0656986874 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
7 Hb_004837_140 0.0661615793 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
8 Hb_009686_030 0.0679514612 - - -
9 Hb_000834_270 0.0687155902 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
10 Hb_153112_020 0.0692603739 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
11 Hb_002214_040 0.0705338098 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_001545_140 0.0716170323 transcription factor TF Family: NAC -
13 Hb_001540_010 0.0731413053 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
14 Hb_002918_200 0.0737441686 - - -
15 Hb_156947_010 0.0767056448 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
16 Hb_001140_060 0.0776430781 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
17 Hb_002477_070 0.0788576662 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
18 Hb_004931_090 0.0792585984 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
19 Hb_001292_020 0.0804200419 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
20 Hb_112798_030 0.0810707763 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008878_030 Hb_008878_030 Hb_000331_080 Hb_000331_080 Hb_008878_030--Hb_000331_080 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_002686_020 Hb_002686_020 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_004994_100 Hb_004994_100 Hb_000331_080--Hb_004994_100 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_063716_050 Hb_063716_050 Hb_003050_080--Hb_063716_050 Hb_003050_080--Hb_002686_020 Hb_003050_080--Hb_000832_140 Hb_001489_060 Hb_001489_060 Hb_003050_080--Hb_001489_060 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_000056_200 Hb_000056_200 Hb_003050_080--Hb_000056_200 Hb_002686_020--Hb_001540_010 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_000832_140--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_000832_140--Hb_000529_190 Hb_004048_110--Hb_153112_020 Hb_001292_020 Hb_001292_020 Hb_004048_110--Hb_001292_020 Hb_004048_110--Hb_002214_040 Hb_004048_110--Hb_012725_050 Hb_001545_140 Hb_001545_140 Hb_004048_110--Hb_001545_140 Hb_000170_010 Hb_000170_010 Hb_004837_140--Hb_000170_010 Hb_002918_200 Hb_002918_200 Hb_004837_140--Hb_002918_200 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_004108_230 Hb_004108_230 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.824 28.5216 43.8753 38.7807 92.8738 86.8372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.555 181.795 120.937 66.1575 42.0246

CAGE analysis