Hb_001540_010

Information

Type -
Description -
Location Contig1540: 47125-47478
Sequence    

Annotation

kegg
ID rcu:RCOM_1275660
description hypothetical protein
nr
ID XP_012079512.1
description PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LM14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17427 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13253: 47096-47728
cDNA
(Sanger)
(ID:Location)		 003_B08.ab1: 47098-47656 , 010_E14.ab1: 47098-47656 , 026_G22.ab1: 47098-47671

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001540_010 0.0 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
2 Hb_003050_080 0.0569994415 - - 40S ribosomal protein S14, putative [Ricinus communis]
3 Hb_002686_020 0.0617098567 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
4 Hb_008878_030 0.0731413053 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
5 Hb_004931_090 0.0739112449 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
6 Hb_005993_040 0.0748387358 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
7 Hb_000970_010 0.0751698281 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
8 Hb_002928_130 0.0752370183 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
9 Hb_010921_010 0.0760985826 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
10 Hb_000127_180 0.0776584811 - - 40S ribosomal protein S18, putative [Ricinus communis]
11 Hb_002893_060 0.0783186448 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
12 Hb_000866_270 0.0784328365 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
13 Hb_011360_140 0.0801639341 - - 40S ribosomal protein S19, putative [Ricinus communis]
14 Hb_002232_440 0.0802754922 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
15 Hb_001235_190 0.0802835521 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
16 Hb_001828_090 0.082128188 - - prohibitin, putative [Ricinus communis]
17 Hb_000656_400 0.0827767329 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
18 Hb_001252_110 0.0830027736 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
19 Hb_009686_030 0.0850727711 - - -
20 Hb_002868_010 0.0862440789 - - 60S ribosomal protein L30, putative [Ricinus communis]

Gene co-expression network

sample Hb_001540_010 Hb_001540_010 Hb_003050_080 Hb_003050_080 Hb_001540_010--Hb_003050_080 Hb_002686_020 Hb_002686_020 Hb_001540_010--Hb_002686_020 Hb_008878_030 Hb_008878_030 Hb_001540_010--Hb_008878_030 Hb_004931_090 Hb_004931_090 Hb_001540_010--Hb_004931_090 Hb_005993_040 Hb_005993_040 Hb_001540_010--Hb_005993_040 Hb_000970_010 Hb_000970_010 Hb_001540_010--Hb_000970_010 Hb_063716_050 Hb_063716_050 Hb_003050_080--Hb_063716_050 Hb_003050_080--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_003050_080--Hb_000832_140 Hb_001489_060 Hb_001489_060 Hb_003050_080--Hb_001489_060 Hb_000056_200 Hb_000056_200 Hb_003050_080--Hb_000056_200 Hb_002686_020--Hb_008878_030 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_008878_030--Hb_000331_080 Hb_008878_030--Hb_003050_080 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_004657_050 Hb_004657_050 Hb_004931_090--Hb_004657_050 Hb_165132_010 Hb_165132_010 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_004931_090--Hb_002686_020 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.874 74.5412 82.84 51.924 155.279 161.395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
199.759 352.451 145.11 97.4351 66.2556

CAGE analysis