Hb_000510_110

Information

Type -
Description -
Location Contig510: 116999-120694
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04450g
description POPTRDRAFT_816104; Signal recognition particle 9 kDa family protein
nr
ID XP_012092093.1
description PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
swissprot
ID Q9SMU7
description Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=3 SV=1
trembl
ID B9GS60
description Signal recognition particle 9 kDa protein OS=Populus trichocarpa GN=POPTR_0002s04450g PE=3 SV=2
Gene Ontology
ID GO:0005737
description signal recognition particle 9 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46273: 117154-117292 , PASA_asmbl_46274: 120168-120647 , PASA_asmbl_46276: 121535-121655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_110 0.0 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
2 Hb_002518_050 0.0590453129 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
3 Hb_000029_200 0.0662767833 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
4 Hb_004931_090 0.0671482014 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
5 Hb_001300_040 0.0734655938 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
6 Hb_012573_070 0.0740867395 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003683_110 0.0744785664 - - JHL10I11.3 [Jatropha curcas]
8 Hb_002864_050 0.0752006061 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
9 Hb_000127_180 0.07976664 - - 40S ribosomal protein S18, putative [Ricinus communis]
10 Hb_002686_020 0.0804361807 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
11 Hb_165132_010 0.0809859195 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
12 Hb_002768_030 0.0816060215 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
13 Hb_010672_060 0.0829343572 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
14 Hb_007416_030 0.0831823645 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
15 Hb_182305_020 0.0835772931 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
16 Hb_000630_060 0.087536325 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
17 Hb_000970_010 0.0877492901 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
18 Hb_001832_060 0.0887838916 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
19 Hb_001780_040 0.0888156589 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
20 Hb_000545_150 0.0888954191 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]

Gene co-expression network

sample Hb_000510_110 Hb_000510_110 Hb_002518_050 Hb_002518_050 Hb_000510_110--Hb_002518_050 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_012573_070 Hb_012573_070 Hb_000510_110--Hb_012573_070 Hb_003683_110 Hb_003683_110 Hb_000510_110--Hb_003683_110 Hb_002518_050--Hb_012573_070 Hb_003018_120 Hb_003018_120 Hb_002518_050--Hb_003018_120 Hb_165132_010 Hb_165132_010 Hb_002518_050--Hb_165132_010 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_002518_050--Hb_001818_020 Hb_002864_050 Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_003893_050 Hb_003893_050 Hb_000029_200--Hb_003893_050 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030 Hb_004657_050 Hb_004657_050 Hb_004931_090--Hb_004657_050 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_002686_020 Hb_002686_020 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_000453_090 Hb_000453_090 Hb_001300_040--Hb_000453_090 Hb_002999_050 Hb_002999_050 Hb_001300_040--Hb_002999_050 Hb_010672_070 Hb_010672_070 Hb_001300_040--Hb_010672_070 Hb_001780_040 Hb_001780_040 Hb_001300_040--Hb_001780_040 Hb_001300_040--Hb_000029_200 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_012573_070--Hb_001314_100 Hb_012573_070--Hb_003683_110 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_003683_110--Hb_001780_040 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_003683_110--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.626 7.3097 14.0525 13.8903 21.1032 18.4825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.2665 62.6183 23.8044 9.0872 10.3223

CAGE analysis