Hb_000545_150

Information

Type -
Description -
Location Contig545: 314073-322484
Sequence    

Annotation

kegg
ID pxb:103946848
description transcription factor BTF3 homolog 4
nr
ID XP_008364695.1
description PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
swissprot
ID P20290
description Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1
trembl
ID B9SB75
description Nascent polypeptide-associated complex subunit beta OS=Ricinus communis GN=RCOM_0785960 PE=3 SV=1
Gene Ontology
ID GO:0006351
description transcription factor btf3 homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47951: 314153-322531 , PASA_asmbl_47953: 314153-315900 , PASA_asmbl_47954: 314234-322378 , PASA_asmbl_47957: 314165-322160
cDNA
(Sanger)
(ID:Location)		 023_P13.ab1: 314165-322160 , 033_L07.ab1: 314191-322278 , 040_P05.ab1: 314163-322352 , 049_K07.ab1: 314153-322066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000545_150 0.0 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
2 Hb_012573_070 0.0579153738 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001818_020 0.0652294596 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
4 Hb_000465_060 0.0652912833 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
5 Hb_000317_340 0.0655181189 - - conserved hypothetical protein [Ricinus communis]
6 Hb_032202_090 0.0683665494 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
7 Hb_001638_260 0.069104882 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
8 Hb_001584_070 0.0695520179 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000526_150 0.0703074908 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
10 Hb_000057_070 0.0707426808 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
11 Hb_143629_230 0.070892373 - - ring finger, putative [Ricinus communis]
12 Hb_001538_120 0.0720808653 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
13 Hb_000970_010 0.0726091354 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
14 Hb_171900_050 0.0735387996 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001383_060 0.0771363424 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_005496_030 0.0772861616 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
17 Hb_000526_040 0.0773071876 - - 60S ribosomal protein L6, putative [Ricinus communis]
18 Hb_002518_050 0.079229866 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
19 Hb_001247_350 0.079434218 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
20 Hb_182305_020 0.0812389355 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000545_150 Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000970_010 Hb_000970_010 Hb_001818_020--Hb_000970_010 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001818_020--Hb_001638_260 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_000317_340--Hb_032202_090 Hb_000317_340--Hb_143629_230 Hb_000365_380 Hb_000365_380 Hb_000317_340--Hb_000365_380 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_032202_090--Hb_012573_070 Hb_032202_090--Hb_000926_300 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
346.754 78.1395 158.005 141.044 281.816 421.758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
559.278 908.453 306.954 137.824 97.7504

CAGE analysis