Hb_032202_090

Information

Type -
Description -
Location Contig32202: 68670-70133
Sequence    

Annotation

kegg
ID mdm:103432761
description ubiquitin-related modifier 1 homolog 2
nr
ID XP_012083502.1
description PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
swissprot
ID B3H7G2
description Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1
trembl
ID A0A067KAA2
description Ubiquitin-related modifier 1 homolog OS=Jatropha curcas GN=JCGZ_14475 PE=3 SV=1
Gene Ontology
ID GO:0005829
description ubiquitin-related modifier 1 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34068: 68735-70132 , PASA_asmbl_34069: 68885-69076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_090 0.0 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
2 Hb_000317_340 0.044973323 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012022_120 0.0682670854 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
4 Hb_000545_150 0.0683665494 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
5 Hb_000505_140 0.0692169111 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
6 Hb_012573_070 0.0716744274 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000926_300 0.0731371601 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
8 Hb_002518_050 0.0775133911 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
9 Hb_001638_260 0.0775328714 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
10 Hb_000085_320 0.079665462 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
11 Hb_000365_380 0.0799462991 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001279_070 0.0816204953 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
13 Hb_001016_030 0.0818116882 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
14 Hb_181288_010 0.0845309343 - - rac-GTP binding protein, putative [Ricinus communis]
15 Hb_000120_760 0.0846969897 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
16 Hb_000120_750 0.0849294353 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
17 Hb_182305_020 0.0850936648 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
18 Hb_000007_100 0.0853784538 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
19 Hb_000465_060 0.0855419244 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
20 Hb_000340_140 0.0857403567 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]

Gene co-expression network

sample Hb_032202_090 Hb_032202_090 Hb_000317_340 Hb_000317_340 Hb_032202_090--Hb_000317_340 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_000545_150 Hb_000545_150 Hb_032202_090--Hb_000545_150 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300 Hb_143629_230 Hb_143629_230 Hb_000317_340--Hb_143629_230 Hb_000365_380 Hb_000365_380 Hb_000317_340--Hb_000365_380 Hb_000317_340--Hb_000545_150 Hb_000465_060 Hb_000465_060 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_012022_120--Hb_000505_140 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000545_150--Hb_000465_060 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_000505_140--Hb_000000_170 Hb_004502_020 Hb_004502_020 Hb_000505_140--Hb_004502_020 Hb_000086_550 Hb_000086_550 Hb_000505_140--Hb_000086_550 Hb_000505_140--Hb_000926_300 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.044 29.6484 56.4537 86.1535 107.802 162.984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
216.502 283.561 100.716 50.0224 49.9335

CAGE analysis