Hb_004502_020

Information

Type -
Description -
Location Contig4502: 6195-9397
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06660g
description hypothetical protein
nr
ID XP_012089384.1
description PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
swissprot
ID O48890
description DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1
trembl
ID B9H5K4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08690g PE=4 SV=1
Gene Ontology
ID GO:0005665
description dna-directed rna polymerase ii subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43169: 6222-9386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004502_020 0.0 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
2 Hb_000505_140 0.0724670526 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
3 Hb_031089_040 0.0839926842 - - thioredoxin H-type 1 [Hevea brasiliensis]
4 Hb_000155_180 0.0872661007 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
5 Hb_000003_730 0.0910281122 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
6 Hb_002207_110 0.0938450429 - - -
7 Hb_032202_090 0.0943136467 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
8 Hb_093666_020 0.0948309185 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
9 Hb_002296_040 0.095570035 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
10 Hb_004223_220 0.0967794181 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
11 Hb_086703_010 0.0997391936 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
12 Hb_001269_320 0.1000068421 - - 40S ribosomal protein S12A [Hevea brasiliensis]
13 Hb_005400_030 0.1004517348 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
14 Hb_003011_040 0.1005211267 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
15 Hb_007432_080 0.101317702 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
16 Hb_005667_040 0.1024199329 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
17 Hb_012022_120 0.1032088051 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
18 Hb_168054_010 0.1032881726 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
19 Hb_000152_550 0.1039711231 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
20 Hb_001247_350 0.106065146 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]

Gene co-expression network

sample Hb_004502_020 Hb_004502_020 Hb_000505_140 Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_031089_040 Hb_031089_040 Hb_004502_020--Hb_031089_040 Hb_000155_180 Hb_000155_180 Hb_004502_020--Hb_000155_180 Hb_000003_730 Hb_000003_730 Hb_004502_020--Hb_000003_730 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_032202_090 Hb_032202_090 Hb_004502_020--Hb_032202_090 Hb_012022_120 Hb_012022_120 Hb_000505_140--Hb_012022_120 Hb_000000_170 Hb_000000_170 Hb_000505_140--Hb_000000_170 Hb_000505_140--Hb_032202_090 Hb_000086_550 Hb_000086_550 Hb_000505_140--Hb_000086_550 Hb_000926_300 Hb_000926_300 Hb_000505_140--Hb_000926_300 Hb_031089_040--Hb_002207_110 Hb_066768_010 Hb_066768_010 Hb_031089_040--Hb_066768_010 Hb_004784_020 Hb_004784_020 Hb_031089_040--Hb_004784_020 Hb_002296_040 Hb_002296_040 Hb_031089_040--Hb_002296_040 Hb_031089_040--Hb_000003_730 Hb_001377_180 Hb_001377_180 Hb_000155_180--Hb_001377_180 Hb_000771_100 Hb_000771_100 Hb_000155_180--Hb_000771_100 Hb_003011_040 Hb_003011_040 Hb_000155_180--Hb_003011_040 Hb_086703_010 Hb_086703_010 Hb_000155_180--Hb_086703_010 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_000684_230 Hb_000684_230 Hb_000003_730--Hb_000684_230 Hb_000003_730--Hb_002296_040 Hb_012799_160 Hb_012799_160 Hb_002207_110--Hb_012799_160 Hb_004032_010 Hb_004032_010 Hb_002207_110--Hb_004032_010 Hb_004306_020 Hb_004306_020 Hb_002207_110--Hb_004306_020 Hb_000152_550 Hb_000152_550 Hb_002207_110--Hb_000152_550 Hb_002207_110--Hb_012022_120 Hb_000317_340 Hb_000317_340 Hb_032202_090--Hb_000317_340 Hb_032202_090--Hb_012022_120 Hb_000545_150 Hb_000545_150 Hb_032202_090--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_032202_090--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.1668 15.0083 47.2112 84.3997 66.6834 167.363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.605 201.131 55.0188 41.7626 36.0847

CAGE analysis