Hb_000003_730

Information

Type -
Description -
Location Contig3: 559086-569333
Sequence    

Annotation

kegg
ID rcu:RCOM_1489430
description DNA repair/transcription protein met18/mms19, putative
nr
ID XP_002515963.1
description DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQE4
description DNA repair/transcription protein met18/mms19, putative OS=Ricinus communis GN=RCOM_1489430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31457: 559368-568757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_730 0.0 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
2 Hb_007441_270 0.0767003267 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
3 Hb_004032_100 0.0850992364 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
4 Hb_031089_040 0.0866118461 - - thioredoxin H-type 1 [Hevea brasiliensis]
5 Hb_000684_230 0.0879848942 - - 40S ribosomal protein S23, putative [Ricinus communis]
6 Hb_002296_040 0.0905348176 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
7 Hb_004502_020 0.0910281122 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
8 Hb_005400_030 0.0970573204 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
9 Hb_000707_030 0.0971019443 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
10 Hb_007735_030 0.1002199341 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
11 Hb_000326_090 0.1012093839 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
12 Hb_000505_140 0.1041166528 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
13 Hb_000086_550 0.1043050315 - - Os02g0814700 [Oryza sativa Japonica Group]
14 Hb_002207_110 0.1046136712 - - -
15 Hb_004195_210 0.1049679413 - - -
16 Hb_005615_080 0.1053702556 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
17 Hb_093666_020 0.1055740213 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_000771_100 0.1079667069 - - Os06g0527300 [Oryza sativa Japonica Group]
19 Hb_180301_010 0.1096594068 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
20 Hb_000787_140 0.1096720143 - - Trafficking protein particle complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_730 Hb_000003_730 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_031089_040 Hb_031089_040 Hb_000003_730--Hb_031089_040 Hb_000684_230 Hb_000684_230 Hb_000003_730--Hb_000684_230 Hb_002296_040 Hb_002296_040 Hb_000003_730--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_000003_730--Hb_004502_020 Hb_007441_270--Hb_000684_230 Hb_067776_010 Hb_067776_010 Hb_007441_270--Hb_067776_010 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_007441_270--Hb_004502_020 Hb_000500_060 Hb_000500_060 Hb_007441_270--Hb_000500_060 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_002207_110 Hb_002207_110 Hb_031089_040--Hb_002207_110 Hb_066768_010 Hb_066768_010 Hb_031089_040--Hb_066768_010 Hb_004784_020 Hb_004784_020 Hb_031089_040--Hb_004784_020 Hb_031089_040--Hb_002296_040 Hb_031089_040--Hb_004502_020 Hb_008173_120 Hb_008173_120 Hb_000684_230--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000684_230--Hb_007193_100 Hb_000684_230--Hb_000024_080 Hb_007317_060 Hb_007317_060 Hb_000684_230--Hb_007317_060 Hb_000103_140 Hb_000103_140 Hb_000684_230--Hb_000103_140 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_000505_140 Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_000155_180 Hb_000155_180 Hb_004502_020--Hb_000155_180 Hb_004502_020--Hb_002207_110 Hb_032202_090 Hb_032202_090 Hb_004502_020--Hb_032202_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6942 0.720557 0.730943 3.40009 2.62202 6.1244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29415 7.01302 2.69208 1.76572 1.06483

CAGE analysis