Hb_067776_010

Information

Type -
Description -
Location Contig67776: 25-279
Sequence    

Annotation

kegg
ID rcu:RCOM_0855750
description hypothetical protein
nr
ID ADR70862.1
description mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I6LNS8
description Mitochondrial 39S ribosomal protein L53 OS=Hevea brasiliensis GN=mRPL53 PE=2 SV=1
Gene Ontology
ID GO:0005840
description mitochondrial 39s ribosomal protein l53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067776_010 0.0 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
2 Hb_000812_040 0.0760747465 - - zinc finger family protein [Populus trichocarpa]
3 Hb_032927_010 0.0790006217 - - -
4 Hb_007441_270 0.1027583748 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
5 Hb_000648_030 0.1065117664 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
6 Hb_012675_070 0.1182535407 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
7 Hb_000003_730 0.1217929012 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
8 Hb_006502_080 0.1253852735 - - -
9 Hb_000108_140 0.1259435426 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
10 Hb_007012_020 0.1266426593 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
11 Hb_007317_060 0.1289923045 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
12 Hb_002259_160 0.1296924795 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
13 Hb_021238_050 0.1302064704 - - conserved hypothetical protein [Ricinus communis]
14 Hb_152554_010 0.1313596425 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
15 Hb_076875_020 0.1314004802 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_000656_100 0.1317666071 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
17 Hb_037887_010 0.1327228348 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
18 Hb_000684_230 0.1328124978 - - 40S ribosomal protein S23, putative [Ricinus communis]
19 Hb_002296_040 0.1333737802 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
20 Hb_007188_020 0.1349587347 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]

Gene co-expression network

sample Hb_067776_010 Hb_067776_010 Hb_000812_040 Hb_000812_040 Hb_067776_010--Hb_000812_040 Hb_032927_010 Hb_032927_010 Hb_067776_010--Hb_032927_010 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_000812_040--Hb_032927_010 Hb_152554_010 Hb_152554_010 Hb_000812_040--Hb_152554_010 Hb_006502_080 Hb_006502_080 Hb_000812_040--Hb_006502_080 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_032927_010--Hb_006502_080 Hb_007188_020 Hb_007188_020 Hb_032927_010--Hb_007188_020 Hb_032927_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_032927_010--Hb_136731_010 Hb_007441_270--Hb_000003_730 Hb_000684_230 Hb_000684_230 Hb_007441_270--Hb_000684_230 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_004502_020 Hb_004502_020 Hb_007441_270--Hb_004502_020 Hb_000500_060 Hb_000500_060 Hb_007441_270--Hb_000500_060 Hb_007317_060 Hb_007317_060 Hb_000648_030--Hb_007317_060 Hb_000380_010 Hb_000380_010 Hb_000648_030--Hb_000380_010 Hb_000493_010 Hb_000493_010 Hb_000648_030--Hb_000493_010 Hb_000648_030--Hb_012675_070 Hb_002259_150 Hb_002259_150 Hb_000648_030--Hb_002259_150 Hb_005588_070 Hb_005588_070 Hb_012675_070--Hb_005588_070 Hb_002259_160 Hb_002259_160 Hb_012675_070--Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_012675_070--Hb_000083_170 Hb_003352_040 Hb_003352_040 Hb_012675_070--Hb_003352_040 Hb_037887_010 Hb_037887_010 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_031089_040 Hb_031089_040 Hb_000003_730--Hb_031089_040 Hb_000003_730--Hb_000684_230 Hb_002296_040 Hb_002296_040 Hb_000003_730--Hb_002296_040 Hb_000003_730--Hb_004502_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4415 14.5626 14.3991 48.3899 25.2508 129.516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.3766 86.7626 44.5164 38.0479 12.9072

CAGE analysis