Hb_003352_040

Information

Type -
Description -
Location Contig3352: 72283-91271
Sequence    

Annotation

kegg
ID rcu:RCOM_1237900
description adhesion regulating molecule, putative
nr
ID XP_012093315.1
description PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
swissprot
ID O48726
description 26S proteasome regulatory subunit RPN13 OS=Arabidopsis thaliana GN=RPN13 PE=1 SV=2
trembl
ID A0A067LI93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19177 PE=4 SV=1
Gene Ontology
ID GO:0005634
description regulatory particle non-atpase partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35109: 86470-91229 , PASA_asmbl_35110: 84845-85304 , PASA_asmbl_35112: 72138-91219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003352_040 0.0 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
2 Hb_000083_170 0.089578407 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
3 Hb_037887_010 0.0925054565 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
4 Hb_002259_160 0.0935154891 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
5 Hb_012675_070 0.0985790633 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
6 Hb_001268_050 0.1069637815 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
7 Hb_001504_080 0.1074345624 - - golgi snare 11 protein, putative [Ricinus communis]
8 Hb_012653_040 0.1079937828 - - UV-induced protein uvi31, putative [Ricinus communis]
9 Hb_006429_010 0.1090442485 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
10 Hb_000326_090 0.1104842883 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
11 Hb_005867_020 0.1191674296 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
12 Hb_000898_050 0.1219003947 - - -
13 Hb_082006_010 0.1225537624 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000125_010 0.1239962002 transcription factor TF Family: mTERF -
15 Hb_006198_080 0.1248293558 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
16 Hb_041205_010 0.1253893063 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005588_070 0.1262780178 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
18 Hb_001205_150 0.1271516261 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
19 Hb_006277_110 0.128628066 - - protein with unknown function [Ricinus communis]
20 Hb_003092_030 0.1292758888 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003352_040 Hb_003352_040 Hb_000083_170 Hb_000083_170 Hb_003352_040--Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_003352_040--Hb_037887_010 Hb_002259_160 Hb_002259_160 Hb_003352_040--Hb_002259_160 Hb_012675_070 Hb_012675_070 Hb_003352_040--Hb_012675_070 Hb_001268_050 Hb_001268_050 Hb_003352_040--Hb_001268_050 Hb_001504_080 Hb_001504_080 Hb_003352_040--Hb_001504_080 Hb_000083_170--Hb_037887_010 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_000326_090 Hb_000326_090 Hb_000083_170--Hb_000326_090 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_000083_170--Hb_002259_160 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_006198_080 Hb_006198_080 Hb_037887_010--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_002259_160--Hb_037887_010 Hb_002259_160--Hb_012675_070 Hb_002259_160--Hb_000326_090 Hb_041205_010 Hb_041205_010 Hb_002259_160--Hb_041205_010 Hb_005588_070 Hb_005588_070 Hb_012675_070--Hb_005588_070 Hb_012675_070--Hb_000083_170 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_003697_050 Hb_003697_050 Hb_001268_050--Hb_003697_050 Hb_003502_090 Hb_003502_090 Hb_001268_050--Hb_003502_090 Hb_001268_050--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_001268_050--Hb_000479_190 Hb_021443_100 Hb_021443_100 Hb_001268_050--Hb_021443_100 Hb_001268_050--Hb_000326_090 Hb_004336_050 Hb_004336_050 Hb_001504_080--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_001504_080--Hb_180301_010 Hb_001504_080--Hb_012653_040 Hb_001504_080--Hb_037887_010 Hb_001504_080--Hb_000083_170 Hb_001504_080--Hb_005588_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.39778 2.53677 4.68864 18.8696 3.13661 22.0996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3866 16.7445 16.6236 8.53032 8.22603

CAGE analysis