Hb_001504_080

Information

Type -
Description -
Location Contig1504: 64541-75792
Sequence    

Annotation

kegg
ID rcu:RCOM_0470970
description golgi snare 11 protein, putative
nr
ID XP_002527313.1
description golgi snare 11 protein, putative [Ricinus communis]
swissprot
ID Q9LMP7
description Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1
trembl
ID B9SMU4
description Golgi snare 11 protein, putative OS=Ricinus communis GN=RCOM_0470970 PE=4 SV=1
Gene Ontology
ID GO:0000139
description golgi snap receptor complex member 1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12643: 64398-75080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_080 0.0 - - golgi snare 11 protein, putative [Ricinus communis]
2 Hb_004336_050 0.0827119904 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
3 Hb_180301_010 0.0873010315 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
4 Hb_012653_040 0.088261634 - - UV-induced protein uvi31, putative [Ricinus communis]
5 Hb_037887_010 0.0948948121 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_000083_170 0.0963229855 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
7 Hb_005588_070 0.0996416227 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
8 Hb_172706_030 0.1001239675 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
9 Hb_000898_050 0.1044879984 - - -
10 Hb_003352_040 0.1074345624 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
11 Hb_002259_160 0.1074669939 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
12 Hb_000672_120 0.1079791343 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
13 Hb_001114_130 0.1133297582 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
14 Hb_002878_010 0.1146224491 - - -
15 Hb_011457_090 0.1152077983 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
16 Hb_004374_140 0.1154031127 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
17 Hb_000326_090 0.1158110721 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
18 Hb_002660_050 0.1163118191 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
19 Hb_000107_310 0.1176549498 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
20 Hb_001205_150 0.1182590301 - - Uncharacterized protein TCM_000403 [Theobroma cacao]

Gene co-expression network

sample Hb_001504_080 Hb_001504_080 Hb_004336_050 Hb_004336_050 Hb_001504_080--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_001504_080--Hb_180301_010 Hb_012653_040 Hb_012653_040 Hb_001504_080--Hb_012653_040 Hb_037887_010 Hb_037887_010 Hb_001504_080--Hb_037887_010 Hb_000083_170 Hb_000083_170 Hb_001504_080--Hb_000083_170 Hb_005588_070 Hb_005588_070 Hb_001504_080--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_180301_010--Hb_004374_140 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_012653_040--Hb_000083_170 Hb_012653_040--Hb_180301_010 Hb_006198_080 Hb_006198_080 Hb_012653_040--Hb_006198_080 Hb_012653_040--Hb_037887_010 Hb_000162_260 Hb_000162_260 Hb_012653_040--Hb_000162_260 Hb_037887_010--Hb_000083_170 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_037887_010--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000083_170--Hb_000162_260 Hb_000326_090 Hb_000326_090 Hb_000083_170--Hb_000326_090 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_005588_070--Hb_004336_050 Hb_012675_070 Hb_012675_070 Hb_005588_070--Hb_012675_070 Hb_005588_070--Hb_180301_010 Hb_005588_070--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_005588_070--Hb_002878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7672 4.34035 5.51595 43.6449 17.7143 60.4185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.696 50.783 47.6429 17.4938 20.8282

CAGE analysis