Hb_005867_020

Information

Type -
Description -
Location Contig5867: 11361-14148
Sequence    

Annotation

kegg
ID tcc:TCM_030971
description Small nuclear ribonucleoprotein family protein isoform 1
nr
ID XP_012075049.1
description PREDICTED: sm-like protein LSM8 [Jatropha curcas]
swissprot
ID Q8VYI0
description Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1
trembl
ID A0A067KT67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10863 PE=4 SV=1
Gene Ontology
ID GO:0019013
description sm-like protein lsm8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49993: 11361-14093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005867_020 0.0 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
2 Hb_000083_170 0.0617968526 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
3 Hb_000479_190 0.0844944208 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003502_090 0.0882235722 - - ATP synthase subunit d, putative [Ricinus communis]
5 Hb_000326_090 0.0883071388 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
6 Hb_000656_170 0.0883790289 - - lsm1, putative [Ricinus communis]
7 Hb_002207_110 0.089504539 - - -
8 Hb_031089_040 0.0903413268 - - thioredoxin H-type 1 [Hevea brasiliensis]
9 Hb_005278_020 0.0915886607 - - PREDICTED: sorcin-like [Jatropha curcas]
10 Hb_007113_070 0.0928583407 - - protein with unknown function [Ricinus communis]
11 Hb_001842_040 0.0946636951 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
12 Hb_026314_020 0.0952875383 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
13 Hb_066768_010 0.0968785883 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_001205_150 0.0969894535 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
15 Hb_001584_190 0.0984734979 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
16 Hb_012799_160 0.0987109606 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
17 Hb_000152_550 0.0987586136 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
18 Hb_037887_010 0.1011765512 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
19 Hb_004784_020 0.1018517688 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
20 Hb_001461_010 0.1027611624 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_005867_020 Hb_005867_020 Hb_000083_170 Hb_000083_170 Hb_005867_020--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_005867_020--Hb_000479_190 Hb_003502_090 Hb_003502_090 Hb_005867_020--Hb_003502_090 Hb_000326_090 Hb_000326_090 Hb_005867_020--Hb_000326_090 Hb_000656_170 Hb_000656_170 Hb_005867_020--Hb_000656_170 Hb_002207_110 Hb_002207_110 Hb_005867_020--Hb_002207_110 Hb_037887_010 Hb_037887_010 Hb_000083_170--Hb_037887_010 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_000083_170--Hb_000326_090 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_003502_090--Hb_003108_020 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_154948_040 Hb_154948_040 Hb_003502_090--Hb_154948_040 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_000656_170--Hb_003108_020 Hb_000102_020 Hb_000102_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000656_170--Hb_000479_190 Hb_012799_160 Hb_012799_160 Hb_002207_110--Hb_012799_160 Hb_002207_110--Hb_004032_010 Hb_004306_020 Hb_004306_020 Hb_002207_110--Hb_004306_020 Hb_002207_110--Hb_031089_040 Hb_000152_550 Hb_000152_550 Hb_002207_110--Hb_000152_550 Hb_012022_120 Hb_012022_120 Hb_002207_110--Hb_012022_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9205 5.73166 14.3989 37.063 15.5846 36.3753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.844 51.6589 33.2361 12.7123 14.3235

CAGE analysis