Hb_000172_030

Information

Type -
Description -
Location Contig172: 69887-76118
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05630g
description POPTRDRAFT_217548; hypothetical protein
nr
ID XP_012092636.1
description PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
swissprot
ID Q8LAL0
description Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1
trembl
ID A0A067LQK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24063 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16117: 70027-74954 , PASA_asmbl_16118: 74985-76089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_030 0.0 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
2 Hb_000787_140 0.0496078227 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
3 Hb_000751_130 0.0654393701 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
4 Hb_000087_020 0.0681664419 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
5 Hb_180301_010 0.0707899792 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
6 Hb_008544_010 0.0730635147 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
7 Hb_001437_230 0.07587984 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
8 Hb_004374_140 0.0791113947 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
9 Hb_004336_050 0.0797311947 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
10 Hb_004032_100 0.07999818 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
11 Hb_000024_030 0.0801409038 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
12 Hb_000024_080 0.0821277971 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
13 Hb_000046_110 0.0829595176 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
14 Hb_001829_060 0.0839624594 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
15 Hb_005398_030 0.0848988691 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
16 Hb_003927_130 0.086154984 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
17 Hb_001718_100 0.088157835 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
18 Hb_002539_090 0.0892284952 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
19 Hb_000364_020 0.0904015714 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
20 Hb_002716_070 0.0904178636 - - PREDICTED: protein ABIL2 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_030 Hb_000172_030 Hb_000787_140 Hb_000787_140 Hb_000172_030--Hb_000787_140 Hb_000751_130 Hb_000751_130 Hb_000172_030--Hb_000751_130 Hb_000087_020 Hb_000087_020 Hb_000172_030--Hb_000087_020 Hb_180301_010 Hb_180301_010 Hb_000172_030--Hb_180301_010 Hb_008544_010 Hb_008544_010 Hb_000172_030--Hb_008544_010 Hb_001437_230 Hb_001437_230 Hb_000172_030--Hb_001437_230 Hb_000787_140--Hb_001437_230 Hb_004032_100 Hb_004032_100 Hb_000787_140--Hb_004032_100 Hb_000787_140--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_000787_140--Hb_000024_080 Hb_000787_140--Hb_000751_130 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000751_130--Hb_000087_020 Hb_000751_130--Hb_004032_100 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000087_020--Hb_000024_080 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_180301_010--Hb_004032_100 Hb_004336_050 Hb_004336_050 Hb_180301_010--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_180301_010--Hb_004374_140 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_008544_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_008544_010--Hb_001461_010 Hb_008544_010--Hb_004336_050 Hb_001191_090 Hb_001191_090 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_003927_130 Hb_003927_130 Hb_001437_230--Hb_003927_130 Hb_001437_230--Hb_000751_130 Hb_000085_320 Hb_000085_320 Hb_001437_230--Hb_000085_320 Hb_001258_080 Hb_001258_080 Hb_001437_230--Hb_001258_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.20146 1.48109 1.79155 5.7636 6.23559 12.1823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0805 14.4017 12.4105 3.71916 2.65112

CAGE analysis