Hb_005400_030

Information

Type -
Description -
Location Contig5400: 25110-26044
Sequence    

Annotation

kegg
ID rcu:RCOM_0174330
description hypothetical protein
nr
ID XP_012092964.1
description PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
swissprot
ID Q1G3M2
description LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1
trembl
ID A0A067LB24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47838: 25056-26080 , PASA_asmbl_47839: 25285-25992 , PASA_asmbl_47841: 26996-27185
cDNA
(Sanger)
(ID:Location)		 008_N23.ab1: 25056-26024 , 045_E12.ab1: 25067-26080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005400_030 0.0 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
2 Hb_004032_100 0.0759927918 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
3 Hb_007735_030 0.0782397955 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
4 Hb_000152_550 0.0829598909 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
5 Hb_000086_550 0.0844074427 - - Os02g0814700 [Oryza sativa Japonica Group]
6 Hb_000024_080 0.0879582065 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
7 Hb_148209_080 0.089017051 - - MED32, putative [Theobroma cacao]
8 Hb_002296_040 0.0906896001 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
9 Hb_000087_020 0.0910884647 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
10 Hb_001009_300 0.0915169468 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
11 Hb_033153_090 0.092544894 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
12 Hb_000364_020 0.0966660521 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
13 Hb_000340_140 0.0967842516 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
14 Hb_000003_730 0.0970573204 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
15 Hb_002016_120 0.097143183 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
16 Hb_000676_290 0.0973003197 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
17 Hb_002662_030 0.0978531486 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
18 Hb_004502_020 0.1004517348 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
19 Hb_006816_530 0.1006085742 - - 60S ribosomal protein L18, putative [Ricinus communis]
20 Hb_000751_130 0.1024537099 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]

Gene co-expression network

sample Hb_005400_030 Hb_005400_030 Hb_004032_100 Hb_004032_100 Hb_005400_030--Hb_004032_100 Hb_007735_030 Hb_007735_030 Hb_005400_030--Hb_007735_030 Hb_000152_550 Hb_000152_550 Hb_005400_030--Hb_000152_550 Hb_000086_550 Hb_000086_550 Hb_005400_030--Hb_000086_550 Hb_000024_080 Hb_000024_080 Hb_005400_030--Hb_000024_080 Hb_148209_080 Hb_148209_080 Hb_005400_030--Hb_148209_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_007735_030--Hb_004032_100 Hb_000707_030 Hb_000707_030 Hb_007735_030--Hb_000707_030 Hb_002296_040 Hb_002296_040 Hb_007735_030--Hb_002296_040 Hb_007735_030--Hb_180301_010 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030 Hb_002207_110 Hb_002207_110 Hb_000152_550--Hb_002207_110 Hb_000152_550--Hb_004032_100 Hb_003964_100 Hb_003964_100 Hb_000152_550--Hb_003964_100 Hb_101705_030 Hb_101705_030 Hb_000152_550--Hb_101705_030 Hb_029866_070 Hb_029866_070 Hb_000152_550--Hb_029866_070 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_000024_080--Hb_000087_020 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030 Hb_001242_110 Hb_001242_110 Hb_148209_080--Hb_001242_110 Hb_148209_080--Hb_000340_140 Hb_000230_540 Hb_000230_540 Hb_148209_080--Hb_000230_540 Hb_148209_080--Hb_004032_100 Hb_148209_080--Hb_000751_130 Hb_015175_030 Hb_015175_030 Hb_148209_080--Hb_015175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5326 6.82848 7.82594 15.7041 11.0206 42.4638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.4642 45.9267 21.2227 13.3107 10.9337

CAGE analysis