Hb_000230_540

Information

Type -
Description -
Location Contig230: 524271-526772
Sequence    

Annotation

kegg
ID cic:CICLE_v10006073mg
description hypothetical protein
nr
ID XP_011090804.1
description PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
swissprot
ID Q9LIS2
description Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1
trembl
ID A0A022RVP4
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014975mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24082: 524427-526733 , PASA_asmbl_24083: 524670-526563
cDNA
(Sanger)
(ID:Location)		 008_J17.ab1: 525311-526724 , 019_E14.ab1: 525497-526724 , 023_B17.ab1: 525498-526724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_540 0.0 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
2 Hb_004032_100 0.0738921991 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
3 Hb_000024_080 0.0767659079 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
4 Hb_000751_130 0.0768052224 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
5 Hb_148209_080 0.0800604169 - - MED32, putative [Theobroma cacao]
6 Hb_005117_010 0.0819409872 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
7 Hb_000205_270 0.0819518036 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
8 Hb_008173_120 0.082108831 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000087_020 0.0824382577 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
10 Hb_000329_310 0.083454038 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
11 Hb_011671_220 0.0858728569 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000676_290 0.0870009601 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
13 Hb_003964_100 0.087349329 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
14 Hb_001829_060 0.0876905827 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
15 Hb_009666_040 0.0882590913 - - glutathione transferase, putative [Ricinus communis]
16 Hb_020000_010 0.0890477381 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
17 Hb_024714_010 0.090596431 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
18 Hb_000926_250 0.0919417883 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
19 Hb_000115_330 0.0924906261 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
20 Hb_000444_050 0.0928398468 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_540 Hb_000230_540 Hb_004032_100 Hb_004032_100 Hb_000230_540--Hb_004032_100 Hb_000024_080 Hb_000024_080 Hb_000230_540--Hb_000024_080 Hb_000751_130 Hb_000751_130 Hb_000230_540--Hb_000751_130 Hb_148209_080 Hb_148209_080 Hb_000230_540--Hb_148209_080 Hb_005117_010 Hb_005117_010 Hb_000230_540--Hb_005117_010 Hb_000205_270 Hb_000205_270 Hb_000230_540--Hb_000205_270 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_000024_080--Hb_000087_020 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000751_130--Hb_000087_020 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030 Hb_001242_110 Hb_001242_110 Hb_148209_080--Hb_001242_110 Hb_000340_140 Hb_000340_140 Hb_148209_080--Hb_000340_140 Hb_148209_080--Hb_004032_100 Hb_148209_080--Hb_000751_130 Hb_015175_030 Hb_015175_030 Hb_148209_080--Hb_015175_030 Hb_011671_220 Hb_011671_220 Hb_005117_010--Hb_011671_220 Hb_004055_140 Hb_004055_140 Hb_005117_010--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_005117_010--Hb_010436_060 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.33921 1.76499 2.21236 3.38323 6.67096 12.2008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84007 12.2354 9.28216 3.97078 3.13907

CAGE analysis