Hb_005117_010

Information

Type -
Description -
Location Contig5117: 7618-15326
Sequence    

Annotation

kegg
ID rcu:RCOM_1635180
description hydroxymethylglutaryl-CoA lyase, putative (EC:4.1.3.4)
nr
ID XP_012072736.1
description PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
swissprot
ID O81027
description Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2
trembl
ID A0A067L0T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06351 PE=4 SV=1
Gene Ontology
ID GO:0004419
description hydroxymethylglutaryl- mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46360: 7650-15159 , PASA_asmbl_46361: 7264-15410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005117_010 0.0 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
2 Hb_011671_220 0.0760760866 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000230_540 0.0819409872 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
4 Hb_004055_140 0.0834326677 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
5 Hb_006641_010 0.0869419397 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
6 Hb_010436_060 0.0918497105 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
7 Hb_000914_070 0.0934698922 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
8 Hb_000380_010 0.095574827 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
9 Hb_148209_080 0.0982222945 - - MED32, putative [Theobroma cacao]
10 Hb_000347_200 0.0989285603 - - lsm1, putative [Ricinus communis]
11 Hb_000173_340 0.0996903279 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
12 Hb_004109_190 0.1025273345 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
13 Hb_005398_030 0.1029822468 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
14 Hb_020000_010 0.103627955 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
15 Hb_154648_010 0.1068932682 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
16 Hb_012305_050 0.1070795287 - - unnamed protein product [Coffea canephora]
17 Hb_008173_120 0.1071387575 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002810_030 0.1084155673 - - hypothetical protein VITISV_015705 [Vitis vinifera]
19 Hb_000751_130 0.1092739624 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
20 Hb_000107_310 0.110943591 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]

Gene co-expression network

sample Hb_005117_010 Hb_005117_010 Hb_011671_220 Hb_011671_220 Hb_005117_010--Hb_011671_220 Hb_000230_540 Hb_000230_540 Hb_005117_010--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_005117_010--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_005117_010--Hb_010436_060 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_011671_220--Hb_000230_540 Hb_011671_220--Hb_004055_140 Hb_011671_220--Hb_010436_060 Hb_002551_020 Hb_002551_020 Hb_011671_220--Hb_002551_020 Hb_004032_100 Hb_004032_100 Hb_000230_540--Hb_004032_100 Hb_000024_080 Hb_000024_080 Hb_000230_540--Hb_000024_080 Hb_000751_130 Hb_000751_130 Hb_000230_540--Hb_000751_130 Hb_148209_080 Hb_148209_080 Hb_000230_540--Hb_148209_080 Hb_000205_270 Hb_000205_270 Hb_000230_540--Hb_000205_270 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_001266_080 Hb_001266_080 Hb_004055_140--Hb_001266_080 Hb_006641_010--Hb_010436_060 Hb_074979_020 Hb_074979_020 Hb_006641_010--Hb_074979_020 Hb_000028_140 Hb_000028_140 Hb_006641_010--Hb_000028_140 Hb_001155_030 Hb_001155_030 Hb_006641_010--Hb_001155_030 Hb_002759_060 Hb_002759_060 Hb_006641_010--Hb_002759_060 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_000364_150 Hb_000364_150 Hb_000914_070--Hb_000364_150 Hb_012490_040 Hb_012490_040 Hb_000914_070--Hb_012490_040 Hb_000914_070--Hb_001266_080 Hb_000347_200 Hb_000347_200 Hb_000914_070--Hb_000347_200 Hb_000914_070--Hb_004055_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.818 9.47884 4.97461 13.8921 21.2159 57.9263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3601 37.3727 37.7144 18.7864 15.2964

CAGE analysis