Hb_000364_150

Information

Type -
Description -
Location Contig364: 161758-166378
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37455: 161954-162637 , PASA_asmbl_37456: 162890-163368 , PASA_asmbl_37457: 164839-165254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_150 0.0 - - -
2 Hb_002023_020 0.086709151 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
3 Hb_000914_070 0.0905609474 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
4 Hb_137403_010 0.0912431548 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
5 Hb_039253_010 0.094162913 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
6 Hb_004055_140 0.0977151015 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_009117_030 0.099557113 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
8 Hb_001266_080 0.0998550733 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
9 Hb_000307_200 0.0999101327 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
10 Hb_012305_050 0.0999994134 - - unnamed protein product [Coffea canephora]
11 Hb_012286_050 0.1031649199 - - PREDICTED: syntaxin-61 [Jatropha curcas]
12 Hb_071736_010 0.1077871308 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
13 Hb_002046_040 0.1097765831 - - PREDICTED: topless-related protein 4 [Malus domestica]
14 Hb_005117_010 0.1118950796 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
15 Hb_000380_010 0.1128860797 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
16 Hb_001019_060 0.1134139176 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
17 Hb_001454_140 0.1140207025 - - protein arginine n-methyltransferase, putative [Ricinus communis]
18 Hb_012490_040 0.1154893296 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
19 Hb_001102_150 0.1156383901 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_022250_130 0.1157982409 - - inositol hexaphosphate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000364_150 Hb_000364_150 Hb_002023_020 Hb_002023_020 Hb_000364_150--Hb_002023_020 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_137403_010 Hb_137403_010 Hb_000364_150--Hb_137403_010 Hb_039253_010 Hb_039253_010 Hb_000364_150--Hb_039253_010 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_002023_020--Hb_039253_010 Hb_003656_140 Hb_003656_140 Hb_002023_020--Hb_003656_140 Hb_002023_020--Hb_137403_010 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_012490_040 Hb_012490_040 Hb_000914_070--Hb_012490_040 Hb_005117_010 Hb_005117_010 Hb_000914_070--Hb_005117_010 Hb_001266_080 Hb_001266_080 Hb_000914_070--Hb_001266_080 Hb_000347_200 Hb_000347_200 Hb_000914_070--Hb_000347_200 Hb_000914_070--Hb_004055_140 Hb_137403_010--Hb_003656_140 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_150360_010 Hb_150360_010 Hb_137403_010--Hb_150360_010 Hb_002805_070 Hb_002805_070 Hb_039253_010--Hb_002805_070 Hb_039253_010--Hb_003656_140 Hb_001102_150 Hb_001102_150 Hb_039253_010--Hb_001102_150 Hb_012286_050 Hb_012286_050 Hb_039253_010--Hb_012286_050 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_004055_140--Hb_005117_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_004055_140--Hb_001266_080 Hb_005016_050 Hb_005016_050 Hb_009117_030--Hb_005016_050 Hb_009117_030--Hb_001266_080 Hb_000889_020 Hb_000889_020 Hb_009117_030--Hb_000889_020 Hb_003333_060 Hb_003333_060 Hb_009117_030--Hb_003333_060 Hb_032458_010 Hb_032458_010 Hb_009117_030--Hb_032458_010 Hb_000166_110 Hb_000166_110 Hb_009117_030--Hb_000166_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01201 0.422807 0.232895 0.667382 1.40256 3.61527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67661 1.20735 1.29498 1.05192 0.612173

CAGE analysis