Hb_039253_010

Information

Type -
Description -
Location Contig39253: 694-1900
Sequence    

Annotation

kegg
ID rcu:RCOM_1178050
description ATP-dependent RNA helicase, putative
nr
ID XP_012082765.1
description PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
swissprot
ID Q1EHT7
description Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1
trembl
ID B9SAR2
description ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1178050 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger ccch domain-containing protein 31 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039253_010 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
2 Hb_002023_020 0.0604638509 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
3 Hb_002805_070 0.0847858437 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
4 Hb_000364_150 0.094162913 - - -
5 Hb_003656_140 0.0985707675 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
6 Hb_001102_150 0.1050866556 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_012286_050 0.1084848908 - - PREDICTED: syntaxin-61 [Jatropha curcas]
8 Hb_000307_200 0.1099829092 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
9 Hb_005883_050 0.1140209508 - - PREDICTED: transportin-3 [Jatropha curcas]
10 Hb_071736_010 0.114955918 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
11 Hb_001840_070 0.1159513473 - - DNA binding protein, putative [Ricinus communis]
12 Hb_137403_010 0.1166510705 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
13 Hb_000679_150 0.1198761497 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
14 Hb_006663_070 0.1207495304 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
15 Hb_006252_010 0.1212895079 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
16 Hb_041392_010 0.1223631165 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
17 Hb_185830_020 0.1226787342 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_009117_030 0.1229076407 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
19 Hb_006332_010 0.1240197043 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
20 Hb_001266_080 0.1242258949 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_039253_010 Hb_039253_010 Hb_002023_020 Hb_002023_020 Hb_039253_010--Hb_002023_020 Hb_002805_070 Hb_002805_070 Hb_039253_010--Hb_002805_070 Hb_000364_150 Hb_000364_150 Hb_039253_010--Hb_000364_150 Hb_003656_140 Hb_003656_140 Hb_039253_010--Hb_003656_140 Hb_001102_150 Hb_001102_150 Hb_039253_010--Hb_001102_150 Hb_012286_050 Hb_012286_050 Hb_039253_010--Hb_012286_050 Hb_002023_020--Hb_003656_140 Hb_137403_010 Hb_137403_010 Hb_002023_020--Hb_137403_010 Hb_002023_020--Hb_000364_150 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_090804_010 Hb_090804_010 Hb_002805_070--Hb_090804_010 Hb_011689_020 Hb_011689_020 Hb_002805_070--Hb_011689_020 Hb_002805_070--Hb_001102_150 Hb_005839_060 Hb_005839_060 Hb_002805_070--Hb_005839_060 Hb_033834_060 Hb_033834_060 Hb_002805_070--Hb_033834_060 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_000364_150--Hb_137403_010 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_003656_140--Hb_137403_010 Hb_041392_010 Hb_041392_010 Hb_003656_140--Hb_041392_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_150360_010 Hb_150360_010 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030 Hb_004732_020 Hb_004732_020 Hb_001102_150--Hb_004732_020 Hb_006114_030 Hb_006114_030 Hb_001102_150--Hb_006114_030 Hb_001102_150--Hb_009117_030 Hb_000424_240 Hb_000424_240 Hb_001102_150--Hb_000424_240 Hb_012286_050--Hb_000307_200 Hb_012286_050--Hb_002023_020 Hb_006455_090 Hb_006455_090 Hb_012286_050--Hb_006455_090 Hb_012286_050--Hb_000364_150 Hb_020902_010 Hb_020902_010 Hb_012286_050--Hb_020902_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.98351 2.53359 2.61677 4.83291 6.95562 23.0131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.05469 5.29061 7.57226 8.48788 2.52669

CAGE analysis