Hb_006114_030

Information

Type transcription factor
Description TF Family: SET
Location Contig6114: 57811-60008
Sequence    

Annotation

kegg
ID mdm:103409022
description uncharacterized LOC103409022
nr
ID KDO77209.1
description hypothetical protein CISIN_1g011639mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID M1ABC5
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401007333 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ribulose- bisphosphate carboxylase oxygenase large subunit n- chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50997: 17492-60078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006114_030 0.0 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
2 Hb_002374_050 0.0719764689 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
3 Hb_004689_050 0.0727044528 - - conserved hypothetical protein [Ricinus communis]
4 Hb_033834_060 0.0768594629 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
5 Hb_003673_060 0.0770852442 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
6 Hb_000046_440 0.0787076942 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
7 Hb_002784_060 0.0788896041 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
8 Hb_000023_190 0.0876763758 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
9 Hb_000429_120 0.0892659835 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
10 Hb_000260_170 0.0905527825 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
11 Hb_012490_030 0.0913534474 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
12 Hb_020719_030 0.0918815507 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
13 Hb_009535_020 0.0936673415 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
14 Hb_000212_240 0.0966982476 - - short-chain dehydrogenase, putative [Ricinus communis]
15 Hb_000567_050 0.0969693384 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
16 Hb_000638_120 0.0969863441 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
17 Hb_002027_070 0.0970812355 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
18 Hb_002027_270 0.0976371487 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
19 Hb_100215_010 0.0979527289 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
20 Hb_000260_220 0.0984015588 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006114_030 Hb_006114_030 Hb_002374_050 Hb_002374_050 Hb_006114_030--Hb_002374_050 Hb_004689_050 Hb_004689_050 Hb_006114_030--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_006114_030--Hb_033834_060 Hb_003673_060 Hb_003673_060 Hb_006114_030--Hb_003673_060 Hb_000046_440 Hb_000046_440 Hb_006114_030--Hb_000046_440 Hb_002784_060 Hb_002784_060 Hb_006114_030--Hb_002784_060 Hb_002054_040 Hb_002054_040 Hb_002374_050--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_002374_050--Hb_000260_220 Hb_002374_050--Hb_004689_050 Hb_001124_160 Hb_001124_160 Hb_002374_050--Hb_001124_160 Hb_100215_010 Hb_100215_010 Hb_002374_050--Hb_100215_010 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_004689_050--Hb_033834_060 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_004689_050--Hb_100215_010 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_033834_060--Hb_004429_100 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_003673_060--Hb_000046_440 Hb_005839_060 Hb_005839_060 Hb_003673_060--Hb_005839_060 Hb_012490_030 Hb_012490_030 Hb_003673_060--Hb_012490_030 Hb_000627_030 Hb_000627_030 Hb_003673_060--Hb_000627_030 Hb_011794_060 Hb_011794_060 Hb_003673_060--Hb_011794_060 Hb_026099_010 Hb_026099_010 Hb_000046_440--Hb_026099_010 Hb_021409_170 Hb_021409_170 Hb_000046_440--Hb_021409_170 Hb_000789_080 Hb_000789_080 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_001221_040 Hb_001221_040 Hb_000046_440--Hb_001221_040 Hb_000567_050 Hb_000567_050 Hb_000046_440--Hb_000567_050 Hb_002784_060--Hb_000567_050 Hb_002027_270 Hb_002027_270 Hb_002784_060--Hb_002027_270 Hb_002784_060--Hb_012490_030 Hb_000031_220 Hb_000031_220 Hb_002784_060--Hb_000031_220 Hb_000212_240 Hb_000212_240 Hb_002784_060--Hb_000212_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9716 6.60684 5.48245 8.19003 16.8606 23.604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.659 6.0397 8.61454 14.7376 10.0685

CAGE analysis