Hb_100215_010

Information

Type -
Description -
Location Contig100215: 37-1250
Sequence    

Annotation

kegg
ID rcu:RCOM_0292800
description nucleolar phosphoprotein, putative
nr
ID XP_012072975.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
swissprot
ID O43390
description Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1
trembl
ID A0A067KM52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06760 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein r-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00266: 374-911 , PASA_asmbl_00267: 1632-1749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100215_010 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
2 Hb_000983_150 0.0634157115 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
3 Hb_000300_440 0.0677314413 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
4 Hb_004689_050 0.0699681988 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003362_070 0.0703826517 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
6 Hb_000023_190 0.0732768536 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
7 Hb_000343_030 0.074139157 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
8 Hb_002255_030 0.079021954 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
9 Hb_004935_030 0.0798550944 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
10 Hb_000922_370 0.0810342748 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
11 Hb_004545_090 0.0810881359 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000109_100 0.0811798809 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
13 Hb_005503_040 0.0814291252 - - PREDICTED: AMP deaminase [Jatropha curcas]
14 Hb_000071_030 0.0820647544 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
15 Hb_001314_010 0.0825007871 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
16 Hb_001617_060 0.082722679 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
17 Hb_002235_160 0.0827665705 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
18 Hb_002374_050 0.0832658312 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
19 Hb_016898_010 0.0837579547 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
20 Hb_000160_290 0.0843025121 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_100215_010 Hb_100215_010 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_000300_440 Hb_000300_440 Hb_100215_010--Hb_000300_440 Hb_004689_050 Hb_004689_050 Hb_100215_010--Hb_004689_050 Hb_003362_070 Hb_003362_070 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_000343_030 Hb_000343_030 Hb_100215_010--Hb_000343_030 Hb_007904_160 Hb_007904_160 Hb_000983_150--Hb_007904_160 Hb_000367_010 Hb_000367_010 Hb_000983_150--Hb_000367_010 Hb_023480_010 Hb_023480_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_000109_100 Hb_000109_100 Hb_000300_440--Hb_000109_100 Hb_000300_440--Hb_000343_030 Hb_003952_150 Hb_003952_150 Hb_000300_440--Hb_003952_150 Hb_001172_010 Hb_001172_010 Hb_000300_440--Hb_001172_010 Hb_007307_020 Hb_007307_020 Hb_000300_440--Hb_007307_020 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_004689_050--Hb_033834_060 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_003464_020 Hb_003464_020 Hb_000023_190--Hb_003464_020 Hb_000567_050 Hb_000567_050 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_010381_060 Hb_010381_060 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_021409_170 Hb_021409_170 Hb_000023_190--Hb_021409_170 Hb_004218_030 Hb_004218_030 Hb_000343_030--Hb_004218_030 Hb_000343_030--Hb_003952_150 Hb_001621_130 Hb_001621_130 Hb_000343_030--Hb_001621_130 Hb_000920_210 Hb_000920_210 Hb_000343_030--Hb_000920_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2769 33.623 17.2331 30.62 39.8113 59
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7416 14.9286 26.1181 42.8919 27.909

CAGE analysis