Hb_000424_240

Information

Type -
Description -
Location Contig424: 265625-267568
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23500g
description POPTRDRAFT_1081290; hypothetical protein
nr
ID XP_012077169.1
description PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
swissprot
ID Q9FX01
description 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1
trembl
ID A0A067KCZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07578 PE=3 SV=1
Gene Ontology
ID GO:0003854
description 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41933: 249674-267781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_240 0.0 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
2 Hb_012286_050 0.1101683082 - - PREDICTED: syntaxin-61 [Jatropha curcas]
3 Hb_001102_150 0.1140010028 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
4 Hb_000307_200 0.116608116 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
5 Hb_006026_040 0.1198903504 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
6 Hb_000696_350 0.1299182142 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
7 Hb_025814_010 0.1321398167 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
8 Hb_006663_070 0.1368676003 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
9 Hb_000364_150 0.1373909898 - - -
10 Hb_007380_090 0.1380925343 - - -
11 Hb_006455_090 0.1383315742 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
12 Hb_039253_010 0.1397588824 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
13 Hb_000679_150 0.1399186667 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
14 Hb_051407_010 0.1399756105 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
15 Hb_003363_010 0.1402069415 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002023_020 0.140563997 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
17 Hb_000042_230 0.1406157141 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
18 Hb_007192_080 0.1406453478 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
19 Hb_003711_040 0.1412120751 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
20 Hb_006252_010 0.1463628158 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000424_240 Hb_000424_240 Hb_012286_050 Hb_012286_050 Hb_000424_240--Hb_012286_050 Hb_001102_150 Hb_001102_150 Hb_000424_240--Hb_001102_150 Hb_000307_200 Hb_000307_200 Hb_000424_240--Hb_000307_200 Hb_006026_040 Hb_006026_040 Hb_000424_240--Hb_006026_040 Hb_000696_350 Hb_000696_350 Hb_000424_240--Hb_000696_350 Hb_025814_010 Hb_025814_010 Hb_000424_240--Hb_025814_010 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_006455_090 Hb_006455_090 Hb_012286_050--Hb_006455_090 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_020902_010 Hb_020902_010 Hb_012286_050--Hb_020902_010 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_002805_070 Hb_002805_070 Hb_001102_150--Hb_002805_070 Hb_004732_020 Hb_004732_020 Hb_001102_150--Hb_004732_020 Hb_001102_150--Hb_039253_010 Hb_006114_030 Hb_006114_030 Hb_001102_150--Hb_006114_030 Hb_009117_030 Hb_009117_030 Hb_001102_150--Hb_009117_030 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_000077_130 Hb_000077_130 Hb_006026_040--Hb_000077_130 Hb_036034_010 Hb_036034_010 Hb_006026_040--Hb_036034_010 Hb_000248_050 Hb_000248_050 Hb_006026_040--Hb_000248_050 Hb_022288_010 Hb_022288_010 Hb_006026_040--Hb_022288_010 Hb_006026_040--Hb_000307_200 Hb_008511_050 Hb_008511_050 Hb_000696_350--Hb_008511_050 Hb_000679_150 Hb_000679_150 Hb_000696_350--Hb_000679_150 Hb_006455_110 Hb_006455_110 Hb_000696_350--Hb_006455_110 Hb_000696_350--Hb_012286_050 Hb_000696_350--Hb_006455_090 Hb_000696_350--Hb_025814_010 Hb_025814_010--Hb_000307_200 Hb_025814_010--Hb_000045_070 Hb_150204_010 Hb_150204_010 Hb_025814_010--Hb_150204_010 Hb_007192_080 Hb_007192_080 Hb_025814_010--Hb_007192_080 Hb_003195_060 Hb_003195_060 Hb_025814_010--Hb_003195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4505 3.38866 3.73456 12.2223 29.6884 61.3297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6886 6.0423 18.7314 13.9363 10.5602

CAGE analysis